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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene (This gene does not contain this module)

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor (This gene does not contain this module)

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Acts as a drug target< (This gene does not contain this module)

Gene: SLC39A9

Summary for SLC39A9

Gene informationGene symbol

SLC39A9

Ensembl ID

ENSG00000029364

Entrez ID

55334

Gene namesolute carrier family 39 member 9
SynonymsFLJ11274
Gene typeprotein_coding
UniProtAcc

Q9NUM3


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Dataset with differentially expressed gene: SLC39A9

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE175716

PDXTumor tissueLiver cancerAdvanced hepatocellular carcinomaTargeted therapysorafenibNAMalignant cells-0.2736014.34e-29

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Expression of SLC39A9 in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to SLC39A9

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.

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MicroRNAs (miRNA) regulating SLC39A9

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
SLC39A9hsa-miR-182-5p99.0484NM_001252148
SLC39A9hsa-miR-9-5p98.2462NM_001252148
SLC39A9hsa-miR-548c-3p97.2423NM_001252148
SLC39A9hsa-miR-428296.2419NM_001252148
SLC39A9hsa-miR-889-3p95.8031NM_018375
SLC39A9hsa-miR-431995.312NM_001252148
SLC39A9hsa-miR-513b-5p95.1033NM_001252148
SLC39A9hsa-miR-93-3p95.0393NM_001252148
SLC39A9hsa-miR-205294.9011NM_018375
SLC39A9hsa-miR-125b-5p94.176NM_001252148
SLC39A9hsa-miR-125a-5p94.176NM_001252148
SLC39A9hsa-miR-1271-5p93.5564NM_001252148
SLC39A9hsa-miR-96-5p93.4834NM_001252148
SLC39A9hsa-miR-1213393.4392NM_001252148
SLC39A9hsa-miR-20692.3846NM_001252148
SLC39A9hsa-miR-1-3p92.3846NM_001252148
SLC39A9hsa-miR-4796-3p92.3316NM_001252150
SLC39A9hsa-miR-371491.1671NM_001252148
SLC39A9hsa-miR-1233-3p90.2041NM_001252148
SLC39A9hsa-miR-391090.1345NM_001252148
SLC39A9hsa-miR-4716-5p89.6576NM_001252148
SLC39A9hsa-miR-990289.5012NM_001252150
SLC39A9hsa-miR-3059-3p89.0295NM_018375
SLC39A9hsa-miR-1252-5p88.6396NM_018375
SLC39A9hsa-miR-61387.7377NM_001252148
SLC39A9hsa-miR-138-2-3p87.3897NM_018375
SLC39A9hsa-miR-670-5p87.0457NM_001252148
SLC39A9hsa-miR-4800-5p86.4698NM_001252150
SLC39A9hsa-miR-447584.9385NM_001252150
SLC39A9hsa-miR-6809-5p84.6622NM_001252148
SLC39A9hsa-miR-34b-3p84.4828NM_018375
SLC39A9hsa-miR-551b-5p84.3989NM_018375
SLC39A9hsa-miR-203a-3p84.3578NM_018375
SLC39A9hsa-miR-506-3p83.9375NM_001252148
SLC39A9hsa-miR-124-3p83.9375NM_001252148
SLC39A9hsa-miR-361-5p83.9285NM_001252150
SLC39A9hsa-miR-316882.7252NM_001252148
SLC39A9hsa-miR-447081.5857NM_001252148
SLC39A9hsa-miR-497-5p81.4741NM_001252148
SLC39A9hsa-miR-4662a-5p81.4024NM_001252148
SLC39A9hsa-miR-582-5p80.7836NM_018375
SLC39A9hsa-miR-487b-5p80.0529NM_018375
SLC39A9hsa-miR-487a-5p80.0529NM_018375
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Motifs and transcription factors (TFs) regulating SLC39A9

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
SLC39A9metacluster_135.11NR2C2 (directAnnotation).
SLC39A9metacluster_141.5NR3C1; THAP1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY2; YY2; ZNF597 (directAnnotation). YY1; YY1; YY1; YY2; ZFP42 (inferredBy_Orthology).
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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.

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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.



1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."