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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene (This gene does not contain this module)

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor (This gene does not contain this module)

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Acts as a drug target< (This gene does not contain this module)

Gene: SH3RF1

Summary for SH3RF1

Gene informationGene symbol

SH3RF1

Ensembl ID

ENSG00000154447

Entrez ID

57630

Gene nameSH3 domain containing ring finger 1
SynonymsKIAA1494|POSH|RNF142|SH3MD2
Gene typeprotein_coding
UniProtAcc

Q7Z6J0


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Dataset with differentially expressed gene: SH3RF1

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE175716

PDXTumor tissueLiver cancerAdvanced hepatocellular carcinomaTargeted therapysorafenibNAMalignant cells-0.4930830.00e+00

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Expression of SH3RF1 in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to SH3RF1

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.

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MicroRNAs (miRNA) regulating SH3RF1

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
SH3RF1hsa-miR-548aa98.2188NM_020870
SH3RF1hsa-miR-548ap-3p98.2188NM_020870
SH3RF1hsa-miR-548t-3p98.2188NM_020870
SH3RF1hsa-miR-6881-5p98.1559NM_020870
SH3RF1hsa-miR-548as-3p96.8101NM_020870
SH3RF1hsa-miR-218-5p95.3806NM_020870
SH3RF1hsa-miR-548l95.3455NM_020870
SH3RF1hsa-miR-316394.9319NM_020870
SH3RF1hsa-miR-548z94.738NM_020870
SH3RF1hsa-miR-548h-3p94.738NM_020870
SH3RF1hsa-miR-548ac94.738NM_020870
SH3RF1hsa-miR-469694.6668NM_020870
SH3RF1hsa-miR-30b-5p93.9958NM_020870
SH3RF1hsa-miR-30e-5p93.9958NM_020870
SH3RF1hsa-miR-30d-5p93.9958NM_020870
SH3RF1hsa-miR-30a-5p93.9958NM_020870
SH3RF1hsa-miR-30c-5p93.9958NM_020870
SH3RF1hsa-miR-5089-3p93.776NM_020870
SH3RF1hsa-miR-548d-3p93.6401NM_020870
SH3RF1hsa-miR-548bb-3p93.6401NM_020870
SH3RF1hsa-miR-5583-3p93.2242NM_020870
SH3RF1hsa-miR-656-3p92.897NM_020870
SH3RF1hsa-miR-1245b-3p92.518NM_020870
SH3RF1hsa-miR-186-5p92.2634NM_020870
SH3RF1hsa-miR-302a-5p91.824NM_020870
SH3RF1hsa-miR-651-3p91.6115NM_020870
SH3RF1hsa-miR-3912-5p91.6072NM_020870
SH3RF1hsa-miR-428291.0856NM_020870
SH3RF1hsa-miR-186-3p90.9595NM_020870
SH3RF1hsa-miR-425-5p90.5691NM_020870
SH3RF1hsa-miR-10527-5p90.1948NM_020870
SH3RF1hsa-miR-568390.0654NM_020870
SH3RF1hsa-miR-26b-5p88.6369NM_020870
SH3RF1hsa-miR-26a-5p88.6369NM_020870
SH3RF1hsa-miR-129788.6369NM_020870
SH3RF1hsa-miR-4524b-3p87.8782NM_020870
SH3RF1hsa-miR-446587.7407NM_020870
SH3RF1hsa-miR-470586.8274NM_020870
SH3RF1hsa-miR-314886.7964NM_020870
SH3RF1hsa-miR-132486.3739NM_020870
SH3RF1hsa-miR-431886.1825NM_020870
SH3RF1hsa-miR-7856-5p85.677NM_020870
SH3RF1hsa-miR-128-3p85.6439NM_020870
SH3RF1hsa-miR-216a-3p85.6439NM_020870
SH3RF1hsa-miR-5011-5p85.1674NM_020870
SH3RF1hsa-miR-1277-5p85.1147NM_020870
SH3RF1hsa-miR-431284.483NM_020870
SH3RF1hsa-miR-642a-3p83.97NM_020870
SH3RF1hsa-miR-642b-3p83.97NM_020870
SH3RF1hsa-miR-130b-5p83.8448NM_020870
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Motifs and transcription factors (TFs) regulating SH3RF1

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
SH3RF1metacluster_135.11NR2C2 (directAnnotation).
SH3RF1metacluster_135.10MBD2; MBD2; MECP2; MECP2 (directAnnotation).
SH3RF1tfdimers__MD00038TFAP2C (directAnnotation).
SH3RF1metacluster_144.3ZNF704; ZNF704 (directAnnotation).
SH3RF1metacluster_7.13ZFX (directAnnotation).
SH3RF1kznf__ZNF730_Imbeault2017_RP_RCADEZNF730 (directAnnotation).
SH3RF1cisbp__M00968MTF2 (directAnnotation).
SH3RF1metacluster_155.23BCL11B; ZNF711; ZNF711 (directAnnotation). ZFY (inferredBy_Orthology).
SH3RF1metacluster_160.20JUND; PRDM15 (directAnnotation).
SH3RF1cisbp__M00341PAX6 (directAnnotation).
SH3RF1metacluster_198.3ZFP64 (directAnnotation).
SH3RF1metacluster_141.5NR3C1; THAP1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY2; YY2; ZNF597 (directAnnotation). YY1; YY1; YY1; YY2; ZFP42 (inferredBy_Orthology).
SH3RF1metacluster_151.1KAT7; PML; SMAD5; TAF1; ZFP37; ZGPAT; ZNF519; ZNF519; ZNF571; ZNF770; ZNF770; ZNF770; ZSCAN22; ZSCAN22 (directAnnotation).
SH3RF1metacluster_61.1DEAF1; DEAF1 (directAnnotation).
SH3RF1cisbp__M00788ZFY (inferredBy_Orthology).
SH3RF1kznf__ZNF213_Schmitges2016_RCADEZNF213 (directAnnotation).
SH3RF1hdpi__ZNF304ZNF304 (directAnnotation).
SH3RF1transfac_pro__M02844BCL6B (inferredBy_Orthology).
SH3RF1metacluster_125.2TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2D; TFAP2D; TFAP2D; TFAP2E; TFAP2E; TFAP2E; TFAP2E; TFAP2E; TFAP2E; ZNF611; ZNF611 (directAnnotation). TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2D; TFAP2D; TFAP2D; TFAP2D; TFAP2D; TFAP2D; TFAP2E; TFAP2E; TFAP2E; TFAP2E; TFAP2E; TFAP2E; TFAP2E (inferredBy_Orthology).
SH3RF1metacluster_133.1ZNF304; ZNF304; ZSCAN22 (directAnnotation).
SH3RF1transfac_pro__M01199TRIM28 (directAnnotation).
SH3RF1kznf__ZNF682_Isakova2017_SMiLE-seqZNF682 (directAnnotation).
SH3RF1metacluster_151.2ZNF23 (directAnnotation).
SH3RF1transfac_public__M00189TFAP2A; TFAP2B; TFAP2C (directAnnotation).
SH3RF1transfac_pro__M01219SP1 (directAnnotation). SP3 (inferredBy_Orthology).
SH3RF1transfac_pro__M03806ZBTB7C (directAnnotation).
SH3RF1transfac_pro__M00915TFAP2A; TFAP2B; TFAP2C (directAnnotation).
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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.

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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.



1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."