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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene (This gene does not contain this module)

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor (This gene does not contain this module)

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Acts as a drug target< (This gene does not contain this module)

Gene: SGMS2

Summary for SGMS2

Gene informationGene symbol

SGMS2

Ensembl ID

ENSG00000164023

Entrez ID

166929

Gene namesphingomyelin synthase 2
SynonymsMGC26963|SMS2
Gene typeprotein_coding
UniProtAcc

Q8NHU3


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Dataset with differentially expressed gene: SGMS2

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE175716

PDXTumor tissueLiver cancerAdvanced hepatocellular carcinomaTargeted therapysorafenibNAMalignant cells-1.079250.00e+00

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Expression of SGMS2 in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to SGMS2

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.

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MicroRNAs (miRNA) regulating SGMS2

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
SGMS2hsa-miR-190a-3p98.9739NM_152621
SGMS2hsa-miR-432898.4811NM_152621
SGMS2hsa-miR-5011-5p97.4622NM_152621
SGMS2hsa-miR-548t-5p97.0797NM_001136257
SGMS2hsa-miR-548az-5p97.0797NM_001136257
SGMS2hsa-miR-9-5p96.026NM_001136257
SGMS2hsa-miR-29c-3p94.8178NM_001136257
SGMS2hsa-miR-29b-3p94.8178NM_001136257
SGMS2hsa-miR-29a-3p94.8178NM_001136257
SGMS2hsa-miR-4423-3p93.934NM_001136257
SGMS2hsa-miR-133a-3p92.8152NM_001136257
SGMS2hsa-miR-133b92.8152NM_001136257
SGMS2hsa-miR-215-3p91.9432NM_152621
SGMS2hsa-miR-568291.5863NM_001136257
SGMS2hsa-miR-548ah-5p91.2998NM_001136257
SGMS2hsa-miR-360991.2998NM_001136257
SGMS2hsa-miR-394190.7552NM_152621
SGMS2hsa-miR-427790.5684NM_001136257
SGMS2hsa-miR-203a-3p89.6926NM_001136257
SGMS2hsa-miR-153-3p89.2214NM_001136257
SGMS2hsa-miR-3691-3p88.986NM_152621
SGMS2hsa-miR-428288.5462NM_152621
SGMS2hsa-miR-3059-5p88.3586NM_152621
SGMS2hsa-miR-608387.815NM_152621
SGMS2hsa-miR-186-5p87.7648NM_001136257
SGMS2hsa-miR-433-3p87.5581NM_152621
SGMS2hsa-miR-6881-3p86.2132NM_152621
SGMS2hsa-miR-425685.9538NM_152621
SGMS2hsa-miR-11181-5p85.9538NM_152621
SGMS2hsa-miR-6758-3p84.1615NM_152621
SGMS2hsa-miR-30e-3p84.0125NM_001136257
SGMS2hsa-miR-30a-3p84.0125NM_001136257
SGMS2hsa-miR-30d-3p84.0125NM_001136257
SGMS2hsa-miR-3664-3p83.5335NM_152621
SGMS2hsa-miR-6880-5p81.2824NM_152621
SGMS2hsa-miR-548c-3p81.1739NM_152621
SGMS2hsa-miR-1213681.0598NM_001136257
SGMS2hsa-miR-6782-3p80.8615NM_001136257
SGMS2hsa-miR-548aj-3p80.0545NM_152621
SGMS2hsa-miR-548x-3p80.0545NM_152621
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Motifs and transcription factors (TFs) regulating SGMS2

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
SGMS2metacluster_135.11NR2C2 (directAnnotation).
SGMS2metacluster_135.10MBD2; MBD2; MECP2; MECP2 (directAnnotation).
SGMS2tfdimers__MD00038TFAP2C (directAnnotation).
SGMS2metacluster_144.3ZNF704; ZNF704 (directAnnotation).
SGMS2metacluster_7.13ZFX (directAnnotation).
SGMS2kznf__ZNF730_Imbeault2017_RP_RCADEZNF730 (directAnnotation).
SGMS2cisbp__M00968MTF2 (directAnnotation).
SGMS2metacluster_155.23BCL11B; ZNF711; ZNF711 (directAnnotation). ZFY (inferredBy_Orthology).
SGMS2metacluster_160.20JUND; PRDM15 (directAnnotation).
SGMS2cisbp__M00341PAX6 (directAnnotation).
SGMS2metacluster_141.5NR3C1; THAP1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY2; YY2; ZNF597 (directAnnotation). YY1; YY1; YY1; YY2; ZFP42 (inferredBy_Orthology).
SGMS2metacluster_151.1KAT7; PML; SMAD5; TAF1; ZFP37; ZGPAT; ZNF519; ZNF519; ZNF571; ZNF770; ZNF770; ZNF770; ZSCAN22; ZSCAN22 (directAnnotation).
SGMS2jaspar__MA0185.1DEAF1 (inferredBy_Orthology).
SGMS2metacluster_61.1DEAF1; DEAF1 (directAnnotation).
SGMS2cisbp__M00788ZFY (inferredBy_Orthology).
SGMS2metacluster_175.1ZNF283 (directAnnotation).
SGMS2hdpi__ZNF304ZNF304 (directAnnotation).
SGMS2transfac_pro__M02844BCL6B (inferredBy_Orthology).
SGMS2metacluster_125.2TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2D; TFAP2D; TFAP2D; TFAP2E; TFAP2E; TFAP2E; TFAP2E; TFAP2E; TFAP2E; ZNF611; ZNF611 (directAnnotation). TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2D; TFAP2D; TFAP2D; TFAP2D; TFAP2D; TFAP2D; TFAP2E; TFAP2E; TFAP2E; TFAP2E; TFAP2E; TFAP2E; TFAP2E (inferredBy_Orthology).
SGMS2metacluster_133.1ZNF304; ZNF304; ZSCAN22 (directAnnotation).
SGMS2transfac_pro__M01199TRIM28 (directAnnotation).
SGMS2kznf__ZNF682_Isakova2017_SMiLE-seqZNF682 (directAnnotation).
SGMS2metacluster_151.2ZNF23 (directAnnotation).
SGMS2transfac_public__M00189TFAP2A; TFAP2B; TFAP2C (directAnnotation).
SGMS2transfac_pro__M01219SP1 (directAnnotation). SP3 (inferredBy_Orthology).
SGMS2transfac_pro__M03806ZBTB7C (directAnnotation).
SGMS2transfac_pro__M00915TFAP2A; TFAP2B; TFAP2C (directAnnotation).
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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.

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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.



1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."