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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene (This gene does not contain this module)

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor (This gene does not contain this module)

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Acts as a drug target< (This gene does not contain this module)

Gene: SGCB

Summary for SGCB

Gene informationGene symbol

SGCB

Ensembl ID

ENSG00000163069

Entrez ID

6443

Gene namesarcoglycan beta
SynonymsA3b|LGMD2E|SGC
Gene typeprotein_coding
UniProtAcc

Q16585


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Dataset with differentially expressed gene: SGCB

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE140440

DU145 and PC cell linesCell lineProstate cancerProstate cancerChemotherapydocetaxelNAMalignant cells0.5582161.67e-02

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Expression of SGCB in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to SGCB

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.

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MicroRNAs (miRNA) regulating SGCB

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
SGCBhsa-miR-5692a99.8118NM_000232
SGCBhsa-miR-431898.5541NM_000232
SGCBhsa-miR-548c-3p97.1269NM_000232
SGCBhsa-miR-101-5p96.8435NM_000232
SGCBhsa-miR-224-5p94.4956NM_000232
SGCBhsa-miR-130394.3191NM_000232
SGCBhsa-miR-3135a94.25NM_000232
SGCBhsa-miR-1285-5p94.0083NM_000232
SGCBhsa-miR-7158-5p93.8295NM_000232
SGCBhsa-miR-152-3p93.4805NM_000232
SGCBhsa-miR-148b-3p93.4805NM_000232
SGCBhsa-miR-148a-3p93.4805NM_000232
SGCBhsa-miR-442993.3255NM_000232
SGCBhsa-miR-320c93.3255NM_000232
SGCBhsa-miR-320a-3p93.3255NM_000232
SGCBhsa-miR-320d93.3255NM_000232
SGCBhsa-miR-320b93.3255NM_000232
SGCBhsa-miR-616-5p92.1497NM_000232
SGCBhsa-miR-569691.7075NM_000232
SGCBhsa-miR-3925-5p91.6425NM_000232
SGCBhsa-miR-227891.0241NM_000232
SGCBhsa-miR-568290.7468NM_000232
SGCBhsa-miR-373-5p90.4331NM_000232
SGCBhsa-miR-371b-5p90.4331NM_000232
SGCBhsa-miR-3613-3p89.4906NM_000232
SGCBhsa-miR-452889.4027NM_000232
SGCBhsa-miR-4699-5p89.2929NM_000232
SGCBhsa-miR-4666b88.9596NM_000232
SGCBhsa-miR-548aw88.0055NM_000232
SGCBhsa-miR-94487.1846NM_000232
SGCBhsa-miR-1468-3p86.4151NM_000232
SGCBhsa-miR-3121-3p86.1841NM_000232
SGCBhsa-miR-392185.8772NM_000232
SGCBhsa-miR-4653-5p85.8772NM_000232
SGCBhsa-miR-548x-5p85.7193NM_000232
SGCBhsa-miR-548aj-5p85.7193NM_000232
SGCBhsa-miR-548g-5p85.7193NM_000232
SGCBhsa-miR-548f-5p85.7193NM_000232
SGCBhsa-miR-5011-3p85.5175NM_000232
SGCBhsa-miR-4795-3p84.896NM_000232
SGCBhsa-miR-366283.99NM_000232
SGCBhsa-miR-3664-5p83.0694NM_000232
SGCBhsa-miR-570182.5522NM_000232
SGCBhsa-miR-431082.3614NM_000232
SGCBhsa-miR-33b-5p82.295NM_000232
SGCBhsa-miR-33a-5p82.295NM_000232
SGCBhsa-miR-6857-5p82.2337NM_000232
SGCBhsa-miR-445681.5155NM_000232
SGCBhsa-miR-377-3p81.4358NM_000232
SGCBhsa-miR-548x-3p80.8087NM_000232
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Motifs and transcription factors (TFs) regulating SGCB

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
SGCBmetacluster_195.2EGR2; KLF10; KLF10; KLF11; KLF11; KLF11; KLF13; KLF13; KLF13; KLF13; KLF13; KLF14; KLF14; KLF14; KLF14; KLF14; KLF15; KLF15; KLF16; KLF3; KLF8; KLF9; KLF9; KLF9; SP1; SP1; SP1; SP3; SP3; SP4; SP8; SP8; SP8; SP9; SP9 (directAnnotation). EGR1; KLF1; KLF12; KLF13; KLF14; KLF14; KLF14; KLF14; KLF14; KLF14; KLF16; KLF17; KLF17; KLF17; KLF17; KLF18; KLF18; KLF18; KLF18; KLF18; KLF18; KLF2; KLF2; KLF2; KLF3; KLF4; KLF5; KLF5; KLF5; KLF6; KLF7; KLF7; KLF8; KLF9; SP1; SP3; SP4; SP4; SP5; SP5; SP5; SP6; SP7; SP8; SP9 (inferredBy_Orthology).
SGCBkznf__ZBTB14_Schmitges2016_RCADEZBTB14 (directAnnotation).
SGCBtransfac_pro__M04617ZBTB7A (directAnnotation).
SGCBmetacluster_3.5KLF14; KLF15; KLF15; KLF16 (directAnnotation).
SGCBtaipale_cyt_meth__ZNF460_NRMCGCCCCCCGN_eDBD_methZNF460 (directAnnotation).
SGCBtaipale_cyt_meth__E2F2_NCGCGCGCGCM_eDBD_methE2F2 (directAnnotation).
SGCBtransfac_pro__M07387ZBTB7A (directAnnotation).
SGCBtransfac_pro__M07436WT1 (directAnnotation).
SGCBtransfac_pro__M07461KLF1; KLF10; KLF11; KLF12; KLF13; KLF15; KLF16; KLF17; KLF2; KLF3; KLF4; KLF5; KLF6; KLF7; KLF8; KLF9 (directAnnotation).
SGCBtransfac_pro__M00716ZBTB14 (directAnnotation).
SGCBswissregulon__hs__CHD1CHD1 (directAnnotation).
SGCBhdpi__HIP2UBE2K (directAnnotation).
SGCBtaipale_tf_pairs__GCM1_SPDEF_RTGNKGGCGGAWG_CAP_reprGCM1; SPDEF (directAnnotation).
SGCBmetacluster_170.2KLF1; KLF10; KLF10; KLF11; KLF11; KLF11; KLF12; KLF12; KLF14; KLF15; KLF17; KLF2; KLF5; KLF7; KLF7; KLF8; MAZ; MAZ; PATZ1; SP1; SP1; SP1; SP2; SP2; SP2; SP2; SP2; SP2; SP2; SP2; SP4; SP4; SP5; SP6; SP7; SP8; SP9; ZNF281 (directAnnotation). E2F1; E2F4; KLF10; KLF13; KLF14; KLF17; KLF2; KLF7; SP1; SP1; SP3; SP4; SP5; SP6; SP7 (inferredBy_Orthology).
SGCBtransfac_pro__M04893TAF1 (directAnnotation).
SGCBtransfac_pro__M03876ZBTB33 (directAnnotation).
SGCBmetacluster_15.2E2F1; E2F1; E2F1; E2F1; E2F1; E2F3; E2F4; E2F4; E2F4; E2F6; E2F6; E2F6; E2F6; E2F6; E2F6; E2F6; E2F7; TFDP1; TFDP2; ZNF566; ZNF566; ZNF574 (directAnnotation). E2F3; E2F3; E2F4 (inferredBy_Orthology).
SGCBmetacluster_133.1ZNF304; ZNF304; ZSCAN22 (directAnnotation).
SGCBkznf__ZNF441_Imbeault2017_RP_RCADEZNF441 (directAnnotation).
SGCBtransfac_pro__M01219SP1 (directAnnotation). SP3 (inferredBy_Orthology).
SGCBmetacluster_3.7SP1; SP1; SP1; SP1; SP1; SP1; SP1; SP1; SP2; SP2; SP2; SP2; SP3; SP3; SP3; SP4; SP4; SP4; SP4; SP4; SP4; SP5 (directAnnotation).
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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.

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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.



1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."