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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene (This gene does not contain this module)

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor (This gene does not contain this module)

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Acts as a drug target< (This gene does not contain this module)

Gene: SAMD4B

Summary for SAMD4B

Gene informationGene symbol

SAMD4B

Ensembl ID

ENSG00000179134

Entrez ID

55095

Gene namesterile alpha motif domain containing 4B
SynonymsFLJ10211|hSmaug2|MGC99832|SMGB
Gene typeprotein_coding
UniProtAcc

Q5PRF9


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Dataset with differentially expressed gene: SAMD4B

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE186960

Panc1 cell lineCell linePancreatic cancerPancreatic ductal adenocarcinoma (PDAC)ChemotherapygemcitabineNAMalignant cells0.4106725.03e-39

GSE207422_Tor

patientsTumor tissueLung cancerEGFR/ALK mutation negative non-small cell lung cancer (NSCLC)Immunotherapytoripalimab + carboplatin + (docetaxel or pemetrexed or emcitabine)postMalignant cells0.317569.37e-13

GSE139386

H3122 cell lineCell lineLung cancerEML4-ALK fusion-positive non-small cell lung cancer (NSCLC)Targeted therapyceritinibNAMalignant cells-0.3345810.00e+00

GSE199333

patientsBone marrow aspirateAcute myeloid leukemiaPrimary FLT3-ITD-mutated acute myeloid leukemia (AML)Targeted therapygilteritinibpreMalignant cells-0.2542170.00e+00

GSE131984_JQ1Pal

SUM159 cell lineCell lineBreast cancerTriple-negative breast cancer (TNBC)Targeted therapyJQ1 + palbociclibNAMalignant cells0.2590897.80e-12

GSE108397

451Lu cell lineCell lineMelanomaMelanomaTargeted therapyPLX-4720NAMalignant cells-0.3441750.00e+00

GSE175716

PDXTumor tissueLiver cancerAdvanced hepatocellular carcinomaTargeted therapysorafenibNAMalignant cells-0.3346413.76e-34

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Expression of SAMD4B in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to SAMD4B

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.

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MicroRNAs (miRNA) regulating SAMD4B

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
SAMD4Bhsa-miR-1212399.2056NM_018028
SAMD4Bhsa-miR-451196.5844NM_001303614
SAMD4Bhsa-miR-664a-3p95.5547NM_018028
SAMD4Bhsa-miR-491-5p95.2575NM_001303614
SAMD4Bhsa-miR-548at-5p94.7832NM_018028
SAMD4Bhsa-miR-330-5p94.6959NM_001303614
SAMD4Bhsa-miR-32693.056NM_001303614
SAMD4Bhsa-miR-425592.08NM_018028
SAMD4Bhsa-miR-453391.7384NM_001303614
SAMD4Bhsa-miR-4725-3p90.5993NM_001303614
SAMD4Bhsa-miR-6780b-5p90.5993NM_001303614
SAMD4Bhsa-miR-4436b-5p89.5205NM_001303614
SAMD4Bhsa-miR-427189.2736NM_001303614
SAMD4Bhsa-miR-6734-5p88.8941NM_001303614
SAMD4Bhsa-miR-4799-5p88.7563NM_018028
SAMD4Bhsa-miR-127588.6476NM_018028
SAMD4Bhsa-miR-92a-2-5p87.2458NM_001303614
SAMD4Bhsa-miR-1295b-3p86.6843NM_001303614
SAMD4Bhsa-miR-766-5p86.4728NM_001303614
SAMD4Bhsa-miR-4433a-5p85.603NM_018028
SAMD4Bhsa-miR-6827-5p85.2607NM_018028
SAMD4Bhsa-miR-5196-5p84.3701NM_001303614
SAMD4Bhsa-miR-4747-5p84.3701NM_001303614
SAMD4Bhsa-miR-548b-3p83.9017NM_001303614
SAMD4Bhsa-miR-4665-5p83.4389NM_018028
SAMD4Bhsa-miR-447883.1444NM_001303614
SAMD4Bhsa-miR-366282.9867NM_001303614
SAMD4Bhsa-miR-449282.3643NM_001303614
SAMD4Bhsa-miR-3925-5p82.1619NM_001303614
SAMD4Bhsa-miR-391881.7735NM_018028
SAMD4Bhsa-miR-6892-3p81.7439NM_018028
SAMD4Bhsa-miR-423-5p81.2237NM_001303614
SAMD4Bhsa-miR-3184-5p81.2237NM_001303614
SAMD4Bhsa-miR-445080.9934NM_001303614
SAMD4Bhsa-miR-444180.9853NM_018028
SAMD4Bhsa-miR-18a-3p80.9011NM_018028
SAMD4Bhsa-miR-6856-5p80.8808NM_001303614
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Motifs and transcription factors (TFs) regulating SAMD4B

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
SAMD4Btransfac_pro__M05578ZFP92 (inferredBy_Orthology).
SAMD4Bmetacluster_151.2ZNF23 (directAnnotation).
SAMD4Btaipale_tf_pairs__E2F1_ELK1_SGCGCNNNNNCGGAAGN_CAP_reprE2F1; ELK1 (directAnnotation).
SAMD4Bjaspar__MA0185.1DEAF1 (inferredBy_Orthology).
SAMD4Btransfac_pro__M01973PLAG1 (directAnnotation).
SAMD4Bkznf__KLF1_Barrera2016.2_PBMKLF1 (directAnnotation).
SAMD4Bcisbp__M07938E2F1 (directAnnotation).
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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.

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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.



1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."