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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene (This gene does not contain this module)

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor (This gene does not contain this module)

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Acts as a drug target< (This gene does not contain this module)

Gene: RRAGD

Summary for RRAGD

Gene informationGene symbol

RRAGD

Ensembl ID

ENSG00000025039

Entrez ID

58528

Gene nameRas related GTP binding D
SynonymsbA11D8.2.1|DKFZP761H171
Gene typeprotein_coding
UniProtAcc

Q9NQL2


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Dataset with differentially expressed gene: RRAGD

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE140440

DU145 and PC cell linesCell lineProstate cancerProstate cancerChemotherapydocetaxelNAMalignant cells3.779012.63e-05

GSE161801_PI

patientsBone marrow aspirateMultiple myelomaRefractory multiple myeloma (MM)Targeted therapycarfilzomib + dexamethasonepreMalignant cells-0.3765522.22e-33

GSE108397

451Lu cell lineCell lineMelanomaMelanomaTargeted therapyPLX-4720NAMalignant cells-0.711820.00e+00

GSE175716

PDXTumor tissueLiver cancerAdvanced hepatocellular carcinomaTargeted therapysorafenibNAMalignant cells0.3887414.00e-16

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Expression of RRAGD in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to RRAGD

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.

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MicroRNAs (miRNA) regulating RRAGD

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
RRAGDhsa-miR-106b-5p98.8017NM_021244
RRAGDhsa-miR-20a-5p98.8017NM_021244
RRAGDhsa-miR-106a-5p98.768NM_021244
RRAGDhsa-miR-526b-3p98.768NM_021244
RRAGDhsa-miR-519d-3p98.6434NM_021244
RRAGDhsa-miR-17-5p98.5779NM_021244
RRAGDhsa-miR-20b-5p98.5779NM_021244
RRAGDhsa-miR-93-5p98.5779NM_021244
RRAGDhsa-miR-6885-3p98.4885NM_021244
RRAGDhsa-miR-520g-3p98.2968NM_021244
RRAGDhsa-miR-520h98.2968NM_021244
RRAGDhsa-miR-58792.9824NM_021244
RRAGDhsa-miR-506-3p92.732NM_021244
RRAGDhsa-miR-124-3p92.732NM_021244
RRAGDhsa-miR-181a-2-3p92.5419NM_021244
RRAGDhsa-miR-454-3p91.8493NM_021244
RRAGDhsa-miR-30090.9823NM_021244
RRAGDhsa-miR-381-3p90.9823NM_021244
RRAGDhsa-miR-5590-5p90.8138NM_021244
RRAGDhsa-miR-7152-3p90.6139NM_021244
RRAGDhsa-miR-130b-3p90.2798NM_021244
RRAGDhsa-miR-130a-3p90.2798NM_021244
RRAGDhsa-miR-301b-3p90.2798NM_021244
RRAGDhsa-miR-366690.2798NM_021244
RRAGDhsa-miR-301a-3p90.2798NM_021244
RRAGDhsa-miR-429590.2798NM_021244
RRAGDhsa-miR-128389.7256NM_021244
RRAGDhsa-miR-397389.7133NM_021244
RRAGDhsa-miR-302e89.1806NM_021244
RRAGDhsa-miR-302a-3p88.9358NM_021244
RRAGDhsa-miR-373-3p88.9358NM_021244
RRAGDhsa-miR-302c-3p88.9358NM_021244
RRAGDhsa-miR-302b-3p88.9358NM_021244
RRAGDhsa-miR-520e-3p88.9358NM_021244
RRAGDhsa-miR-520b-3p88.9358NM_021244
RRAGDhsa-miR-520c-3p88.9358NM_021244
RRAGDhsa-miR-520a-3p88.9358NM_021244
RRAGDhsa-miR-302d-3p88.9358NM_021244
RRAGDhsa-miR-520d-3p88.9358NM_021244
RRAGDhsa-miR-372-3p88.9358NM_021244
RRAGDhsa-miR-442287.4241NM_021244
RRAGDhsa-miR-6772-3p86.036NM_021244
RRAGDhsa-miR-360985.3849NM_021244
RRAGDhsa-miR-548ah-5p85.3109NM_021244
RRAGDhsa-miR-548e-5p85.2052NM_021244
RRAGDhsa-miR-411-3p84.1025NM_021244
RRAGDhsa-miR-379-3p84.1025NM_021244
RRAGDhsa-miR-7856-5p84.0294NM_021244
RRAGDhsa-miR-55983.7885NM_021244
RRAGDhsa-miR-9983-3p83.3622NM_021244
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Motifs and transcription factors (TFs) regulating RRAGD

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
RRAGDmetacluster_7.13ZFX (directAnnotation).
RRAGDcisbp__M01863ZNF711 (inferredBy_Orthology).
RRAGDmetacluster_151.2ZNF23 (directAnnotation).
RRAGDmetacluster_170.2KLF1; KLF10; KLF10; KLF11; KLF11; KLF11; KLF12; KLF12; KLF14; KLF15; KLF17; KLF2; KLF5; KLF7; KLF7; KLF8; MAZ; MAZ; PATZ1; SP1; SP1; SP1; SP2; SP2; SP2; SP2; SP2; SP2; SP2; SP2; SP4; SP4; SP5; SP6; SP7; SP8; SP9; ZNF281 (directAnnotation). E2F1; E2F4; KLF10; KLF13; KLF14; KLF17; KLF2; KLF7; SP1; SP1; SP3; SP4; SP5; SP6; SP7 (inferredBy_Orthology).
RRAGDmetacluster_144.3ZNF704; ZNF704 (directAnnotation).
RRAGDhomer__TWVGGTCCGC_HINFPHINFP (directAnnotation).
RRAGDmetacluster_135.10MBD2; MBD2; MECP2; MECP2 (directAnnotation).
RRAGDtaipale_tf_pairs__GCM1_SPDEF_RTRSKGGCGGANNNNNNATCCNNN_CAP_reprGCM1; SPDEF (directAnnotation).
RRAGDjaspar__MA0079.5SP1 (directAnnotation).
RRAGDkznf__ZNF594_Schmitges2016_RCADEZNF594 (directAnnotation).
RRAGDmetacluster_195.2EGR2; KLF10; KLF10; KLF11; KLF11; KLF11; KLF13; KLF13; KLF13; KLF13; KLF13; KLF14; KLF14; KLF14; KLF14; KLF14; KLF15; KLF15; KLF16; KLF3; KLF8; KLF9; KLF9; KLF9; SP1; SP1; SP1; SP3; SP3; SP4; SP8; SP8; SP8; SP9; SP9 (directAnnotation). EGR1; KLF1; KLF12; KLF13; KLF14; KLF14; KLF14; KLF14; KLF14; KLF14; KLF16; KLF17; KLF17; KLF17; KLF17; KLF18; KLF18; KLF18; KLF18; KLF18; KLF18; KLF2; KLF2; KLF2; KLF3; KLF4; KLF5; KLF5; KLF5; KLF6; KLF7; KLF7; KLF8; KLF9; SP1; SP3; SP4; SP4; SP5; SP5; SP5; SP6; SP7; SP8; SP9 (inferredBy_Orthology).
RRAGDkznf__ZBTB14_Schmitges2016_RCADEZBTB14 (directAnnotation).
RRAGDtransfac_pro__M04617ZBTB7A (directAnnotation).
RRAGDmetacluster_3.5KLF14; KLF15; KLF15; KLF16 (directAnnotation).
RRAGDtaipale_cyt_meth__ZNF460_NRMCGCCCCCCGN_eDBD_methZNF460 (directAnnotation).
RRAGDtaipale_cyt_meth__E2F2_NCGCGCGCGCM_eDBD_methE2F2 (directAnnotation).
RRAGDtransfac_pro__M07387ZBTB7A (directAnnotation).
RRAGDtransfac_pro__M07436WT1 (directAnnotation).
RRAGDtransfac_pro__M07461KLF1; KLF10; KLF11; KLF12; KLF13; KLF15; KLF16; KLF17; KLF2; KLF3; KLF4; KLF5; KLF6; KLF7; KLF8; KLF9 (directAnnotation).
RRAGDtransfac_pro__M00716ZBTB14 (directAnnotation).
RRAGDswissregulon__hs__CHD1CHD1 (directAnnotation).
RRAGDhdpi__HIP2UBE2K (directAnnotation).
RRAGDtaipale_tf_pairs__GCM1_SPDEF_RTGNKGGCGGAWG_CAP_reprGCM1; SPDEF (directAnnotation).
RRAGDtransfac_pro__M04893TAF1 (directAnnotation).
RRAGDtransfac_pro__M03876ZBTB33 (directAnnotation).
RRAGDmetacluster_15.2E2F1; E2F1; E2F1; E2F1; E2F1; E2F3; E2F4; E2F4; E2F4; E2F6; E2F6; E2F6; E2F6; E2F6; E2F6; E2F6; E2F7; TFDP1; TFDP2; ZNF566; ZNF566; ZNF574 (directAnnotation). E2F3; E2F3; E2F4 (inferredBy_Orthology).
RRAGDmetacluster_133.1ZNF304; ZNF304; ZSCAN22 (directAnnotation).
RRAGDkznf__ZNF441_Imbeault2017_RP_RCADEZNF441 (directAnnotation).
RRAGDtransfac_pro__M01219SP1 (directAnnotation). SP3 (inferredBy_Orthology).
RRAGDmetacluster_3.7SP1; SP1; SP1; SP1; SP1; SP1; SP1; SP1; SP2; SP2; SP2; SP2; SP3; SP3; SP3; SP4; SP4; SP4; SP4; SP4; SP4; SP5 (directAnnotation).
RRAGDtaipale_tf_pairs__GCM1_ETV4_RTGCGGGCGGAAGTR_CAPETV4; GCM1 (directAnnotation).
RRAGDmetacluster_22.29NFE2 (directAnnotation).
RRAGDtaipale_tf_pairs__GCM1_ELK1_RTGCGGGCGGAAGTN_CAP_2ELK1; GCM1 (directAnnotation).
RRAGDmetacluster_55.3E2F6; EGR1; NRF1; NRF1; NRF1; NRF1; NRF1; NRF1; NRF1; NRF1; NRF1; NRF1; ZBTB2; ZSCAN10 (directAnnotation). NFE2L1; NRF1; NRF1; NRF1 (inferredBy_Orthology).
RRAGDtaipale_tf_pairs__TFAP2C_MAX_TNSCCNNNGGSNNNNCACGTGN_CAP_reprMAX; TFAP2C (directAnnotation).
RRAGDtransfac_pro__M00652NRF1 (directAnnotation).
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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.

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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.



1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."