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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene (This gene does not contain this module)

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor (This gene does not contain this module)

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Acts as a drug target< (This gene does not contain this module)

Gene: RPRD2

Summary for RPRD2

Gene informationGene symbol

RPRD2

Ensembl ID

ENSG00000163125

Entrez ID

23248

Gene nameregulation of nuclear pre-mRNA domain containing 2
SynonymsFLJ32145|HSPC099|KIAA0460
Gene typeprotein_coding
UniProtAcc

Q5VT52


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Dataset with differentially expressed gene: RPRD2

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE207422_Tor

patientsTumor tissueLung cancerEGFR/ALK mutation negative non-small cell lung cancer (NSCLC)Immunotherapytoripalimab + carboplatin + (docetaxel or pemetrexed or emcitabine)postMalignant cells-0.3096449.65e-20

GSE108397

451Lu cell lineCell lineMelanomaMelanomaTargeted therapyPLX-4720NAMalignant cells-0.3502650.00e+00

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Expression of RPRD2 in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to RPRD2

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.

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MicroRNAs (miRNA) regulating RPRD2

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
RPRD2hsa-miR-23a-3p97.875NM_001297673
RPRD2hsa-miR-23c97.875NM_001297673
RPRD2hsa-miR-23b-3p97.875NM_001297673
RPRD2hsa-miR-477994.4851NM_001297673
RPRD2hsa-miR-5006-3p93.6279NM_001297673
RPRD2hsa-miR-3160-5p93.0012NM_015203
RPRD2hsa-miR-485-5p92.5052NM_015203
RPRD2hsa-miR-6884-5p92.5052NM_015203
RPRD2hsa-miR-4755-5p92.2299NM_001297673
RPRD2hsa-miR-6715a-3p91.4206NM_001297673
RPRD2hsa-miR-519a-3p90.8275NM_015203
RPRD2hsa-miR-519c-3p90.8275NM_015203
RPRD2hsa-miR-519b-3p90.8275NM_015203
RPRD2hsa-miR-4728-5p89.4538NM_001297673
RPRD2hsa-miR-6785-5p89.4538NM_001297673
RPRD2hsa-miR-6727-3p88.5328NM_001297673
RPRD2hsa-miR-76587.6329NM_001297673
RPRD2hsa-miR-196a-1-3p87.5347NM_015203
RPRD2hsa-miR-6887-3p87.5306NM_015203
RPRD2hsa-miR-374b-5p86.8829NM_015203
RPRD2hsa-miR-130b-5p86.264NM_001297673
RPRD2hsa-miR-6881-5p86.1211NM_015203
RPRD2hsa-miR-374a-5p85.9748NM_015203
RPRD2hsa-miR-520a-5p85.8909NM_001297673
RPRD2hsa-miR-525-5p85.8909NM_001297673
RPRD2hsa-miR-11181-3p85.8413NM_001297673
RPRD2hsa-miR-4722-3p85.17NM_001297673
RPRD2hsa-miR-149-3p84.283NM_001297673
RPRD2hsa-miR-6883-5p84.283NM_001297673
RPRD2hsa-miR-6884-3p83.7744NM_001297673
RPRD2hsa-miR-211783.1549NM_001297673
RPRD2hsa-miR-5692c82.982NM_015203
RPRD2hsa-miR-5692b82.982NM_015203
RPRD2hsa-miR-4738-3p82.9805NM_001297673
RPRD2hsa-miR-516a-5p82.83NM_001297673
RPRD2hsa-miR-552-5p82.3923NM_015203
RPRD2hsa-miR-4782-3p82.0274NM_001297673
RPRD2hsa-miR-219a-5p82.0274NM_001297673
RPRD2hsa-miR-6766-3p82.0274NM_001297673
RPRD2hsa-miR-3151-5p81.1523NM_001297673
RPRD2hsa-miR-71180.2863NM_001297673
RPRD2hsa-miR-570-3p80.1757NM_001297673
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Motifs and transcription factors (TFs) regulating RPRD2

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
RPRD2hocomoco__TYY2_HUMAN.H11MO.0.DYY2 (directAnnotation).
RPRD2transfac_pro__M04950EGR1 (directAnnotation).
RPRD2metacluster_55.5ZNF541 (directAnnotation).
RPRD2transfac_pro__M04913ZBTB7A (directAnnotation).
RPRD2taipale_tf_pairs__TEAD4_ETV1_RSCGGAAATRCM_CAPETV1; TEAD4 (directAnnotation).
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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.

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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.



1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."