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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene (This gene does not contain this module)

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor (This gene does not contain this module)

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Acts as a drug target< (This gene does not contain this module)

Gene: RNF19B

Summary for RNF19B

Gene informationGene symbol

RNF19B

Ensembl ID

ENSG00000116514

Entrez ID

127544

Gene namering finger protein 19B
SynonymsFLJ90005|IBRDC3|NKLAM
Gene typeprotein_coding
UniProtAcc

Q6ZMZ0


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Dataset with differentially expressed gene: RNF19B

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE207422_Tor

patientsTumor tissueLung cancerEGFR/ALK mutation negative non-small cell lung cancer (NSCLC)Immunotherapytoripalimab + carboplatin + (docetaxel or pemetrexed or emcitabine)postNeutrophils0.7008371.03e-17

GSE189460

patientsBone marrow aspirateMultiple myelomaMultiple myeloma (MM)Targeted therapybortezomib + melphalan + prednisolonepreMono/Macro-0.2702131.65e-16

GSE199333

patientsBone marrow aspirateAcute myeloid leukemiaPrimary FLT3-ITD-mutated acute myeloid leukemia (AML)Targeted therapygilteritinibpostMalignant cells-0.372160.00e+00

GSE175716

PDXTumor tissueLiver cancerAdvanced hepatocellular carcinomaTargeted therapysorafenibNAMalignant cells-0.347021.96e-29

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Expression of RNF19B in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to RNF19B

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.

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MicroRNAs (miRNA) regulating RNF19B

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
RNF19Bhsa-miR-329-3p94.0682NM_001127361
RNF19Bhsa-miR-362-3p94.0682NM_001127361
RNF19Bhsa-miR-449093.1459NM_001127361
RNF19Bhsa-miR-394191.4313NM_001127361
RNF19Bhsa-miR-4436b-3p91.0024NM_001127361
RNF19Bhsa-miR-6879-5p91.0024NM_001127361
RNF19Bhsa-miR-4632-5p91.0024NM_001127361
RNF19Bhsa-miR-6735-5p91.0024NM_001127361
RNF19Bhsa-miR-7843-5p91.0024NM_001127361
RNF19Bhsa-miR-848589.3179NM_001127361
RNF19Bhsa-miR-429289.0973NM_001127361
RNF19Bhsa-miR-6791-5p89.0973NM_001127361
RNF19Bhsa-miR-314888.309NM_153341
RNF19Bhsa-miR-95-5p87.8073NM_001127361
RNF19Bhsa-miR-4778-3p86.4854NM_001127361
RNF19Bhsa-miR-64886.2136NM_001127361
RNF19Bhsa-miR-219b-5p85.4066NM_001127361
RNF19Bhsa-miR-876-5p85.381NM_001127361
RNF19Bhsa-miR-514b-3p84.1216NM_001127361
RNF19Bhsa-miR-514a-3p84.1216NM_001127361
RNF19Bhsa-miR-5582-3p83.2504NM_001127361
RNF19Bhsa-miR-548ar-3p83.2504NM_001127361
RNF19Bhsa-miR-117982.355NM_001127361
RNF19Bhsa-miR-58782.0467NM_001127361
RNF19Bhsa-miR-316781.2617NM_001127361
RNF19Bhsa-miR-316380.7034NM_001127361
RNF19Bhsa-miR-6830-3p80.5261NM_001127361
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Motifs and transcription factors (TFs) regulating RNF19B

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
RNF19Bkznf__ZNF213_Schmitges2016_RCADEZNF213 (directAnnotation).
RNF19Bkznf__ZFP57_Imbeault2017_RP_ChIP-seqZFP57 (directAnnotation).
RNF19Bjaspar__MA1721.1ZNF93 (directAnnotation).
RNF19Btaipale_tf_pairs__ETV5_HES7_CCGGAANNNNNNCACGTG_CAPETV5; HES7 (directAnnotation).
RNF19Btaipale_tf_pairs__TFAP2C_E2F8_NNTCCCGCNNNCCNNNGGC_CAP_reprE2F8; TFAP2C (directAnnotation).
RNF19Bhomer__NANTGCSGCA_Zfp57ZFP57 (directAnnotation).
RNF19Btaipale_cyt_meth__ZNF460_NRMCGCCCCCCGN_eDBD_methZNF460 (directAnnotation).
RNF19Btransfac_pro__M01088DEAF1 (inferredBy_Orthology).
RNF19Bmetacluster_126.3LIN28B; LIN28B (directAnnotation).
RNF19Bmetacluster_23.9GLIS1; GLIS3; GLIS3; ZNF575 (directAnnotation). GLIS2; GLIS2; GLIS3; ZNF575; ZXDA; ZXDA; ZXDA; ZXDA; ZXDB; ZXDB; ZXDB; ZXDB; ZXDC; ZXDC; ZXDC; ZXDC (inferredBy_Orthology).
RNF19Btransfac_pro__M01973PLAG1 (directAnnotation).
RNF19Bmetacluster_143.13ZBTB7A (directAnnotation).
RNF19Btaipale_tf_pairs__ETV5_HES7_NNCACGTGNNNNCCGGAANN_CAPETV5; HES7 (directAnnotation).
RNF19Bkznf__ZNF548_Imbeault2017_OM_RCADEZNF548 (directAnnotation).
RNF19Bhocomoco__ZFP57_MOUSE.H11MO.0.BZFP57 (inferredBy_Orthology).
RNF19Btaipale_tf_pairs__ETV5_TCF3_RNCGGAAGNNNNNCASSTGN_CAP_reprETV5; TCF3 (directAnnotation).
RNF19Bkznf__ZNF77_Imbeault2017_OM_MEMEZNF77 (directAnnotation).
RNF19Btransfac_pro__M01239RELA (directAnnotation).
RNF19Btransfac_pro__M05707ZNF239 (inferredBy_Orthology).
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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.

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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.



1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."