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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene (This gene does not contain this module)

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor (This gene does not contain this module)

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Acts as a drug target< (This gene does not contain this module)

Gene: RDH10

Summary for RDH10

Gene informationGene symbol

RDH10

Ensembl ID

ENSG00000121039

Entrez ID

157506

Gene nameretinol dehydrogenase 10
SynonymsSDR16C4
Gene typeprotein_coding
UniProtAcc

Q8IZV5


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Dataset with differentially expressed gene: RDH10

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE163836

FCIBC02 cell lineCell lineBreast cancerInflammatory breast cancerChemotherapypaclitaxelNAMalignant cells0.7445680.00e+00

GSE207422_Tor

patientsTumor tissueLung cancerEGFR/ALK mutation negative non-small cell lung cancer (NSCLC)Immunotherapytoripalimab + carboplatin + (docetaxel or pemetrexed or emcitabine)postMalignant cells-0.2984952.98e-06

GSE139386

H3122 cell lineCell lineLung cancerEML4-ALK fusion-positive non-small cell lung cancer (NSCLC)Targeted therapyceritinibNAMalignant cells1.53610.00e+00

GSE168668

LNCaP cell lineCell lineProstate cancerProstate cancerTargeted therapyenzalutamideNAMalignant cells0.6599540.00e+00

GSE175716

PDXTumor tissueLiver cancerAdvanced hepatocellular carcinomaTargeted therapysorafenibNAMalignant cells-0.5118051.72e-36

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Expression of RDH10 in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to RDH10

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.

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MicroRNAs (miRNA) regulating RDH10

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
RDH10hsa-miR-4715-5p97.213NM_172037
RDH10hsa-miR-6831-5p95.6744NM_172037
RDH10hsa-miR-494-3p95.4673NM_172037
RDH10hsa-miR-3613-3p95.0439NM_172037
RDH10hsa-miR-3927-3p94.3913NM_172037
RDH10hsa-miR-4684-5p92.4623NM_172037
RDH10hsa-miR-364691.7349NM_172037
RDH10hsa-miR-568890.1453NM_172037
RDH10hsa-miR-3074-3p89.4165NM_172037
RDH10hsa-miR-4650-3p88.4438NM_172037
RDH10hsa-miR-453487.2225NM_172037
RDH10hsa-miR-1213686.9034NM_172037
RDH10hsa-miR-495-3p86.8312NM_172037
RDH10hsa-miR-506-3p86.366NM_172037
RDH10hsa-miR-124-3p86.366NM_172037
RDH10hsa-miR-10397-5p86.2825NM_172037
RDH10hsa-miR-4756-3p86.2054NM_172037
RDH10hsa-miR-808286.0255NM_172037
RDH10hsa-miR-200c-3p85.8013NM_172037
RDH10hsa-miR-200b-3p85.8013NM_172037
RDH10hsa-miR-42985.8013NM_172037
RDH10hsa-miR-431184.6286NM_172037
RDH10hsa-miR-561-5p83.73NM_172037
RDH10hsa-miR-63082.9176NM_172037
RDH10hsa-miR-428682.4435NM_172037
RDH10hsa-miR-316482.2425NM_172037
RDH10hsa-miR-6820-3p82.2425NM_172037
RDH10hsa-miR-5001-3p82.0531NM_172037
RDH10hsa-miR-848581.4082NM_172037
RDH10hsa-miR-4777-5p81.1632NM_172037
RDH10hsa-miR-1910-5p81.0199NM_172037
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Motifs and transcription factors (TFs) regulating RDH10

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
RDH10taipale_tf_pairs__ATF4_TEF_RNMTGATGCAATN_CAPATF4; TEF (directAnnotation).
RDH10taipale_tf_pairs__ATF4_CEBPD_NGATGATGCAATNN_CAPATF4; CEBPD (directAnnotation).
RDH10metacluster_156.2ATF3; ATF4; ATF4; ATF4; ATF4; ATF4; ATF4; CEBPG; CEBPG; DDIT3; MYC (directAnnotation). ATF4; ATF4; ATF4; CEBPG; DDIT3 (inferredBy_Orthology).
RDH10kznf__PRDM1_modENCODE.2_ChIP-seqPRDM1 (directAnnotation).
RDH10metacluster_35.7HINFP (inferredBy_Orthology).
RDH10jaspar__MA0185.1DEAF1 (inferredBy_Orthology).
RDH10dbtfbs__E4F1_K562_ENCSR731LHZ_merged_N1E4F1 (directAnnotation).
RDH10metacluster_34.4ETS1; ETS1; ETS1; HCFC1; SIX5; SIX5; SIX5; SIX5; SMARCC2; SMARCC2; THAP11; THAP11; ZNF143; ZNF143; ZNF143; ZNF143 (directAnnotation). TBX2; THAP11; THAP11; ZNF143 (inferredBy_Orthology).
RDH10taipale_cyt_meth__ZNF385D_NCGTCGCGACGN_eDBD_methZNF385D (directAnnotation).
RDH10swissregulon__mm__E2f7E2F7 (inferredBy_Orthology).
RDH10hocomoco__OTX1_HUMAN.H11MO.0.DOTX1 (directAnnotation).
RDH10hdpi__TP73TP73 (directAnnotation).
RDH10hdpi__MYEF2MYEF2 (directAnnotation).
RDH10metacluster_131.6EGR2; EGR4 (directAnnotation). EGR2; EGR3 (inferredBy_Orthology).
RDH10transfac_pro__M04886ETS1 (directAnnotation).
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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.

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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.



1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."