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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene (This gene does not contain this module)

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor (This gene does not contain this module)

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Acts as a drug target< (This gene does not contain this module)

Gene: RBBP6

Summary for RBBP6

Gene informationGene symbol

RBBP6

Ensembl ID

ENSG00000122257

Entrez ID

5930

Gene nameRB binding protein 6, ubiquitin ligase
SynonymsP2P-R|PACT|SNAMA
Gene typeprotein_coding
UniProtAcc

NA


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Dataset with differentially expressed gene: RBBP6

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE153697

patientsBone marrow aspirateAcute lymphoblastic leukemiaRelapsed B-cell acute lymphoblastic leukemia (B-ALL)Immunotherapyanti-CD19 CAR-TNAMalignant cells-0.3138852.19e-08

GSE139386

H3122 cell lineCell lineLung cancerEML4-ALK fusion-positive non-small cell lung cancer (NSCLC)Targeted therapyceritinibNAMalignant cells-0.4093330.00e+00

GSE199333

patientsBone marrow aspirateAcute myeloid leukemiaPrimary FLT3-ITD-mutated acute myeloid leukemia (AML)Targeted therapygilteritinibpostNK cells-0.480720.00e+00

GSE199333

patientsBone marrow aspirateAcute myeloid leukemiaPrimary FLT3-ITD-mutated acute myeloid leukemia (AML)Targeted therapygilteritinibpostErythrocytes-0.2559490.00e+00

GSE199333

patientsBone marrow aspirateAcute myeloid leukemiaPrimary FLT3-ITD-mutated acute myeloid leukemia (AML)Targeted therapygilteritinibpostCD8+ T cells-0.3528388.41e-44

GSE199333

patientsBone marrow aspirateAcute myeloid leukemiaPrimary FLT3-ITD-mutated acute myeloid leukemia (AML)Targeted therapygilteritinibpostMalignant cells-0.3375950.00e+00

GSE199333

patientsBone marrow aspirateAcute myeloid leukemiaPrimary FLT3-ITD-mutated acute myeloid leukemia (AML)Targeted therapygilteritinibpostCD4+ T cells-0.376120.00e+00

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Expression of RBBP6 in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to RBBP6

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.

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MicroRNAs (miRNA) regulating RBBP6

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
RBBP6hsa-miR-876-3p97.5895NM_006910
RBBP6hsa-miR-463796.2418NM_032626
RBBP6hsa-miR-607195.8824NM_006910
RBBP6hsa-miR-128394.8739NM_032626
RBBP6hsa-miR-4755-3p94.1926NM_006910
RBBP6hsa-miR-148a-5p94.1545NM_032626
RBBP6hsa-miR-23b-3p94.0814NM_006910
RBBP6hsa-miR-23a-3p94.0814NM_006910
RBBP6hsa-miR-23c94.0814NM_006910
RBBP6hsa-miR-467393.1848NM_006910
RBBP6hsa-miR-4645-5p93.1848NM_006910
RBBP6hsa-miR-568391.8908NM_006910
RBBP6hsa-miR-9-3p90.549NM_006910
RBBP6hsa-miR-4699-3p89.9659NM_032626
RBBP6hsa-miR-548c-3p88.8558NM_006910
RBBP6hsa-miR-5006-5p88.7227NM_006910
RBBP6hsa-miR-452888.4178NM_006910
RBBP6hsa-miR-15a-5p88.4054NM_006910
RBBP6hsa-miR-16-5p88.4054NM_006910
RBBP6hsa-miR-424-5p88.4054NM_006910
RBBP6hsa-miR-497-5p88.4054NM_006910
RBBP6hsa-miR-6838-5p88.4054NM_006910
RBBP6hsa-miR-195-5p88.4054NM_006910
RBBP6hsa-miR-15b-5p88.4054NM_006910
RBBP6hsa-miR-4778-5p87.8614NM_006910
RBBP6hsa-miR-5591-3p87.393NM_032626
RBBP6hsa-miR-320b86.0155NM_006910
RBBP6hsa-miR-320c86.0155NM_006910
RBBP6hsa-miR-320a-3p86.0155NM_006910
RBBP6hsa-miR-442986.0155NM_006910
RBBP6hsa-miR-320d86.0155NM_006910
RBBP6hsa-let-7c-3p85.573NM_006910
RBBP6hsa-miR-367185.3894NM_006910
RBBP6hsa-miR-368684.2595NM_006910
RBBP6hsa-miR-545-3p84.2276NM_006910
RBBP6hsa-miR-427281.6468NM_032626
RBBP6hsa-miR-323a-3p81.4973NM_006910
RBBP6hsa-miR-1212980.2808NM_032626
RBBP6hsa-miR-660-5p80.0044NM_032626
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Motifs and transcription factors (TFs) regulating RBBP6

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
RBBP6transfac_pro__M04950EGR1 (directAnnotation).
RBBP6taipale_cyt_meth__E2F2_GCGCGCGCGYW_eDBD_reprE2F2 (directAnnotation).
RBBP6taipale_tf_pairs__ERF_HES7_NNCACGTGNNNNCCGGAANN_CAP_reprERF; HES7 (directAnnotation).
RBBP6taipale_tf_pairs__E2F1_ELK1_SGCGCNNNNNCGGAAGN_CAP_reprE2F1; ELK1 (directAnnotation).
RBBP6transfac_pro__M00652NRF1 (directAnnotation).
RBBP6taipale_tf_pairs__E2F1_HES7_RRCRCGYGYNNNNSGCGCSN_CAP_reprE2F1; HES7 (directAnnotation).
RBBP6transfac_pro__M04866HDAC2 (directAnnotation).
RBBP6metacluster_34.1ZNF143; ZNF143; ZNF143; ZNF76; ZNF76; ZNF76 (directAnnotation).
RBBP6hocomoco__TYY2_HUMAN.H11MO.0.DYY2 (directAnnotation).
RBBP6transfac_pro__M01783SP2 (directAnnotation).
RBBP6metacluster_155.23BCL11B; ZNF711; ZNF711 (directAnnotation). ZFY (inferredBy_Orthology).
RBBP6metacluster_111.3ATF1; ATF3; CREB1; CREB1; CREB1; CREB1; CREB1; CREM; CREM; CREM; CREM; E4F1; E4F1 (directAnnotation). CREB1; CREB1; CREM; JDP2 (inferredBy_Orthology).
RBBP6transfac_pro__M01253CNOT3 (directAnnotation).
RBBP6homer__TWVGGTCCGC_HINFPHINFP (directAnnotation).
RBBP6metacluster_7.13ZFX (directAnnotation).
RBBP6cisbp__M00968MTF2 (directAnnotation).
RBBP6transfac_pro__M04817ZBTB33 (directAnnotation).
RBBP6taipale__YY2_DBD_NNCCGCCATNW_reprYY2 (directAnnotation).
RBBP6transfac_pro__M00803E2F1; E2F3; E2F4; TFDP1 (directAnnotation).
RBBP6transfac_pro__M02913SP140 (inferredBy_Orthology).
RBBP6jaspar__MA0185.1DEAF1 (inferredBy_Orthology).
RBBP6transfac_pro__M01090SMAD9 (inferredBy_Orthology).
RBBP6flyfactorsurvey__Mad_FlyReg_FBgn0011648SMAD9 (inferredBy_Orthology).
RBBP6cisbp__M00788ZFY (inferredBy_Orthology).
RBBP6transfac_pro__M00430E2F1 (directAnnotation).
RBBP6metacluster_126.3LIN28B; LIN28B (directAnnotation).
RBBP6transfac_pro__M04893TAF1 (directAnnotation).
RBBP6transfac_pro__M01199TRIM28 (directAnnotation).
RBBP6metacluster_151.1KAT7; PML; SMAD5; TAF1; ZFP37; ZGPAT; ZNF519; ZNF519; ZNF571; ZNF770; ZNF770; ZNF770; ZSCAN22; ZSCAN22 (directAnnotation).
RBBP6hdpi__HIP2UBE2K (directAnnotation).
RBBP6taipale_cyt_meth__ZBTB37_NYACCGCRNNYACCGYR_eDBD_meth_reprZBTB37 (directAnnotation).
RBBP6hdpi__RARARARA (directAnnotation).
RBBP6hdpi__ELF2ELF2 (directAnnotation).
RBBP6transfac_pro__M02898SMAD3 (directAnnotation).
RBBP6metacluster_61.1DEAF1; DEAF1 (directAnnotation).
RBBP6hdpi__HTATIP2HTATIP2 (directAnnotation).
RBBP6transfac_pro__M04916TAF1 (directAnnotation).
RBBP6transfac_pro__M07310SP5 (directAnnotation).
RBBP6cisbp__M01863ZNF711 (inferredBy_Orthology).
RBBP6transfac_pro__M01219SP1 (directAnnotation). SP3 (inferredBy_Orthology).
RBBP6metacluster_182.10ZFX (directAnnotation).
RBBP6hdpi__ZNF304ZNF304 (directAnnotation).
RBBP6metacluster_141.4GLIS2 (directAnnotation).
RBBP6flyfactorsurvey__pho_SOLEXA_F1-3YY1 (inferredBy_Orthology).
RBBP6dbtfbs__GMEB1_K562_ENCSR928KOR_merged_N1GMEB1 (directAnnotation).
RBBP6kznf__ZNF343_Imbeault2017_OM_RCADEZNF343 (directAnnotation).
RBBP6transfac_public__M00024E2F1 (directAnnotation).
RBBP6metacluster_144.8ZNF30; ZNF30 (directAnnotation).
RBBP6metacluster_144.3ZNF704; ZNF704 (directAnnotation).
RBBP6metacluster_151.2ZNF23 (directAnnotation).
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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.

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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.



1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."