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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene (This gene does not contain this module)

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor (This gene does not contain this module)

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Acts as a drug target< (This gene does not contain this module)

Gene: RAB1B

Summary for RAB1B

Gene informationGene symbol

RAB1B

Ensembl ID

ENSG00000174903

Entrez ID

81876

Gene nameRAB1B, member RAS oncogene family
SynonymsNA
Gene typeprotein_coding
UniProtAcc

NA


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Dataset with differentially expressed gene: RAB1B

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE186960

Panc1 cell lineCell linePancreatic cancerPancreatic ductal adenocarcinoma (PDAC)ChemotherapygemcitabineNAMalignant cells0.6140710.00e+00

GSE164237

patientsPeripheral blood mononuclear cellsMelanomaAdvanced stages of melanoma ImmunotherapypembrolizumabpreCD8+ T cells-0.2708830.00e+00

GSE139386

H3122 cell lineCell lineLung cancerEML4-ALK fusion-positive non-small cell lung cancer (NSCLC)Targeted therapyceritinibNAMalignant cells-1.120860.00e+00

GSE108397

451Lu cell lineCell lineMelanomaMelanomaTargeted therapyPLX-4720NAMalignant cells-0.2865480.00e+00

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Expression of RAB1B in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to RAB1B

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.

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MicroRNAs (miRNA) regulating RAB1B

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
RAB1Bhsa-miR-6841-3p97.8901NM_030981
RAB1Bhsa-miR-2355-5p97.5341NM_030981
RAB1Bhsa-miR-6721-5p95.8325NM_030981
RAB1Bhsa-miR-1207-5p93.7266NM_030981
RAB1Bhsa-miR-4763-3p92.2429NM_030981
RAB1Bhsa-miR-6735-5p90.3653NM_030981
RAB1Bhsa-miR-6879-5p90.3653NM_030981
RAB1Bhsa-miR-6836-5p90.1259NM_030981
RAB1Bhsa-miR-613290.1259NM_030981
RAB1Bhsa-miR-1343-5p89.2129NM_030981
RAB1Bhsa-miR-939-5p89.2129NM_030981
RAB1Bhsa-miR-7843-5p89.0021NM_030981
RAB1Bhsa-miR-4632-5p89.0021NM_030981
RAB1Bhsa-miR-4436b-3p88.4087NM_030981
RAB1Bhsa-miR-654-5p86.9984NM_030981
RAB1Bhsa-miR-541-3p86.9984NM_030981
RAB1Bhsa-miR-103a-3p86.1913NM_030981
RAB1Bhsa-miR-10786.1913NM_030981
RAB1Bhsa-miR-4640-5p85.8736NM_030981
RAB1Bhsa-miR-1909-3p83.745NM_030981
RAB1Bhsa-miR-6722-3p83.745NM_030981
RAB1Bhsa-miR-502-5p82.9001NM_030981
RAB1Bhsa-miR-4726-5p82.6863NM_030981
RAB1Bhsa-miR-6895-5p82.3153NM_030981
RAB1Bhsa-miR-4485-5p81.9169NM_030981
RAB1Bhsa-miR-477581.806NM_030981
RAB1Bhsa-miR-469281.5889NM_030981
RAB1Bhsa-miR-7110-5p81.0744NM_030981
RAB1Bhsa-miR-6842-5p81.0744NM_030981
RAB1Bhsa-miR-452-3p80.7495NM_030981
RAB1Bhsa-miR-1915-5p80.6126NM_030981
RAB1Bhsa-miR-6764-5p80.0447NM_030981
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Motifs and transcription factors (TFs) regulating RAB1B

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
RAB1Btaipale_tf_pairs__ETS2_RCCGGAAGTG_HTETS2 (directAnnotation).
RAB1Bjaspar__MA1483.2ELF2 (directAnnotation).
RAB1Btransfac_pro__M05628ZNF735 (directAnnotation).
RAB1Btransfac_pro__M04826EP300 (directAnnotation).
RAB1Bmetacluster_55.3E2F6; EGR1; NRF1; NRF1; NRF1; NRF1; NRF1; NRF1; NRF1; NRF1; NRF1; NRF1; ZBTB2; ZSCAN10 (directAnnotation). NFE2L1; NRF1; NRF1; NRF1 (inferredBy_Orthology).
RAB1Bdbtfbs__E2F8_representative_N1E2F8 (directAnnotation).
RAB1Bmetacluster_34.4ETS1; ETS1; ETS1; HCFC1; SIX5; SIX5; SIX5; SIX5; SMARCC2; SMARCC2; THAP11; THAP11; ZNF143; ZNF143; ZNF143; ZNF143 (directAnnotation). TBX2; THAP11; THAP11; ZNF143 (inferredBy_Orthology).
RAB1Bmetacluster_191.3EHF; ELF1; ELF1; ELF1; ELF4; ELK1; ELK3; ELK3; ELK4; ELK4; ERF; ETS1; ETS2; ETV3; ETV4; ETV5; FEV; FEV; FLI1; FLI1; GABPA; GABPA; GABPA; GABPA; GABPA; GABPA; SPDEF; ZNF200 (directAnnotation). ELK1; ELK1; ELK3; ELK3; ELK4; ELK4; ETV1; ETV1; ETV4; ETV4; ETV4; ETV5; GABPA; GABPA (inferredBy_Orthology).
RAB1Bcisbp__M08198ELF1 (directAnnotation).
RAB1Bmetacluster_138.2ELF1; ELF2; ELF4; ELK1; ELK1; ELK1; ELK1; ELK3; ELK4; ELK4; ELK4; ELK4; ELK4; ELK4; ELK4; ERF; ERG; ERG; ERG; ERG; ETS1; ETS1; ETS2; ETS2; ETV1; ETV1; ETV1; ETV2; ETV3; ETV4; ETV5; ETV5; FEV; FLI1; FLI1; GABPA; GABPA; KMT2B; SPDEF; SPDEF; SPDEF; ZBTB11; ZNF518A; ZNF580 (directAnnotation). ELF1; ELF2; ELF4; ELK1; ELK1; ELK3; ELK4; ERG; ETS1; ETS2; ETV1; ETV2; ETV3; ETV4; ETV5; FEV; FLI1; FLI1; GABPA; SPDEF; SPDEF (inferredBy_Orthology).
RAB1Bmetacluster_34.3EGR1; ETS1; SETDB1; SIX5; SIX5; ZNF143; ZNF76 (directAnnotation).
RAB1Btaipale_tf_pairs__TEAD4_HOXA13_RCATWCCNNNNNNTTTAYNNN_CAP_reprHOXA13; TEAD4 (directAnnotation).
RAB1Btfdimers__MD00370YY1; ZNF384 (directAnnotation).
RAB1Bhomer__ACAGGATGTGGT_ETS_RUNXRUNX1 (directAnnotation).
RAB1Btfdimers__MD00342IRF1; YY1 (directAnnotation).
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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.

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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.



1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."