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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene (This gene does not contain this module)

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor (This gene does not contain this module)

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Acts as a drug target< (This gene does not contain this module)

Gene: RAB18

Summary for RAB18

Gene informationGene symbol

RAB18

Ensembl ID

ENSG00000099246

Entrez ID

22931

Gene nameRAB18, member RAS oncogene family
SynonymsNA
Gene typeprotein_coding
UniProtAcc

NA


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Dataset with differentially expressed gene: RAB18

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE140440

DU145 and PC cell linesCell lineProstate cancerProstate cancerChemotherapydocetaxelNAMalignant cells-0.6656761.09e-05

GSE139386

H3122 cell lineCell lineLung cancerEML4-ALK fusion-positive non-small cell lung cancer (NSCLC)Targeted therapyceritinibNAMalignant cells-0.2774430.00e+00

GSE131984_JQ1

SUM159 cell lineCell lineBreast cancerTriple-negative breast cancer (TNBC)Targeted therapyJQ1NAMalignant cells-0.3004231.17e-15

GSE131984_JQ1Pac

SUM159 cell lineCell lineBreast cancerTriple-negative breast cancer (TNBC)Targeted therapyJQ1 + paclitaxelNAMalignant cells-0.3988342.93e-17

GSE131984_JQ1Pal

SUM159 cell lineCell lineBreast cancerTriple-negative breast cancer (TNBC)Targeted therapyJQ1 + palbociclibNAMalignant cells-0.3261461.09e-14

GSE115251

Kelly cell lineCell lineNeuroblastomaNeuroblastomaTargeted therapyTAE684NAMalignant cells-0.2817690.00e+00

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Expression of RAB18 in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to RAB18

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.

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MicroRNAs (miRNA) regulating RAB18

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
RAB18hsa-miR-10527-5p99.0707NM_001256410
RAB18hsa-miR-316398.9508NM_001256410
RAB18hsa-miR-548ax98.548NM_001256411
RAB18hsa-miR-548ao-5p98.548NM_001256411
RAB18hsa-miR-1185-1-3p96.9896NM_001256410
RAB18hsa-let-7f-2-3p96.9896NM_001256410
RAB18hsa-miR-1185-2-3p96.9896NM_001256410
RAB18hsa-miR-3065-5p95.2788NM_001256411
RAB18hsa-miR-428494.166NM_001256411
RAB18hsa-miR-221-3p94.0602NM_001256410
RAB18hsa-miR-222-3p94.0602NM_001256410
RAB18hsa-miR-450394.0084NM_001256411
RAB18hsa-miR-7159-5p93.3934NM_001256411
RAB18hsa-miR-64393.0768NM_001256411
RAB18hsa-miR-548v91.6822NM_001256410
RAB18hsa-miR-568891.0118NM_001256411
RAB18hsa-miR-19a-3p90.9013NM_001256410
RAB18hsa-miR-19b-3p90.9013NM_001256410
RAB18hsa-miR-366290.2727NM_001256411
RAB18hsa-miR-548e-5p90.0214NM_001256411
RAB18hsa-miR-6792-5p90.0048NM_001256410
RAB18hsa-miR-495-3p89.4506NM_001256411
RAB18hsa-miR-589-3p87.1606NM_001256410
RAB18hsa-miR-551b-5p86.2883NM_001256411
RAB18hsa-miR-6859-5p86.242NM_001256411
RAB18hsa-miR-312586.242NM_001256411
RAB18hsa-miR-391686.242NM_001256411
RAB18hsa-miR-129086.0907NM_001256411
RAB18hsa-miR-58385.9233NM_001256411
RAB18hsa-miR-892c-5p85.8606NM_001256410
RAB18hsa-miR-4760-3p85.4163NM_001256410
RAB18hsa-miR-320d85.0362NM_001256411
RAB18hsa-miR-442985.0362NM_001256411
RAB18hsa-miR-320b85.0362NM_001256411
RAB18hsa-miR-320c85.0362NM_001256411
RAB18hsa-miR-320a-3p85.0362NM_001256411
RAB18hsa-miR-671-5p84.0875NM_001256411
RAB18hsa-miR-548p83.1838NM_001256411
RAB18hsa-miR-607483.0138NM_001256411
RAB18hsa-miR-4745-5p82.123NM_001256411
RAB18hsa-miR-3192-3p81.7788NM_001256410
RAB18hsa-miR-998681.4865NM_001256411
RAB18hsa-miR-129481.4865NM_001256411
RAB18hsa-miR-428981.1492NM_001256410
RAB18hsa-miR-7-2-3p81.0664NM_001256411
RAB18hsa-miR-7-1-3p81.0664NM_001256411
RAB18hsa-miR-2115-3p80.3715NM_001256411
RAB18hsa-miR-190a-3p80.3101NM_001256410
RAB18hsa-miR-7110-5p80.2748NM_001256411
RAB18hsa-miR-6842-5p80.2748NM_001256411
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Motifs and transcription factors (TFs) regulating RAB18

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
RAB18metacluster_55.3E2F6; EGR1; NRF1; NRF1; NRF1; NRF1; NRF1; NRF1; NRF1; NRF1; NRF1; NRF1; ZBTB2; ZSCAN10 (directAnnotation). NFE2L1; NRF1; NRF1; NRF1 (inferredBy_Orthology).
RAB18dbtfbs__E2F8_representative_N1E2F8 (directAnnotation).
RAB18transfac_pro__M04950EGR1 (directAnnotation).
RAB18metacluster_15.3E2F1; E2F6; E2F8; E2F8; TFDP1 (directAnnotation). E2F3 (inferredBy_Orthology).
RAB18taipale_cyt_meth__ZNF385D_NCGTCGCGACGN_eDBD_methZNF385D (directAnnotation).
RAB18metacluster_197.2E2F4; E2F7; E2F7; E2F7; E2F8; E2F8 (directAnnotation).
RAB18taipale_tf_pairs__E2F1_ELK1_SGCGCNNNNNCGGAAGN_CAP_reprE2F1; ELK1 (directAnnotation).
RAB18transfac_pro__M00652NRF1 (directAnnotation).
RAB18taipale_tf_pairs__E2F1_HES7_RRCRCGYGYNNNNSGCGCSN_CAP_reprE2F1; HES7 (directAnnotation).
RAB18jaspar__MA1122.1TFDP1 (directAnnotation).
RAB18swissregulon__hs__ZBTB14ZBTB14 (directAnnotation).
RAB18transfac_pro__M04826EP300 (directAnnotation).
RAB18hdpi__TP73TP73 (directAnnotation).
RAB18taipale_tf_pairs__ELK1_TBX21_TNRCACCGGAAGNN_CAP_reprELK1; TBX21 (directAnnotation).
RAB18swissregulon__mm__E2f7E2F7 (inferredBy_Orthology).
RAB18swissregulon__hs__ELK1ELK1 (directAnnotation).
RAB18metacluster_81.7CREB1 (directAnnotation).
RAB18hdpi__ELF2ELF2 (directAnnotation).
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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.

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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.



1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."