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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene (This gene does not contain this module)

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor (This gene does not contain this module)

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Acts as a drug target< (This gene does not contain this module)

Gene: PTBP2

Summary for PTBP2

Gene informationGene symbol

PTBP2

Ensembl ID

ENSG00000117569

Entrez ID

58155

Gene namepolypyrimidine tract binding protein 2
SynonymsbrPTB|nPTB|PTB|PTBLP
Gene typeprotein_coding
UniProtAcc

NA


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Dataset with differentially expressed gene: PTBP2

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE199333

patientsBone marrow aspirateAcute myeloid leukemiaPrimary FLT3-ITD-mutated acute myeloid leukemia (AML)Targeted therapygilteritinibpostMalignant cells-0.2707460.00e+00

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Expression of PTBP2 in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to PTBP2

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.

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MicroRNAs (miRNA) regulating PTBP2

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
PTBP2hsa-miR-314899.3883NM_001300985
PTBP2hsa-miR-548aj-3p99.2882NM_001300985
PTBP2hsa-miR-548x-3p99.2882NM_001300985
PTBP2hsa-miR-548j-3p99.0597NM_001300985
PTBP2hsa-miR-548am-3p99.0597NM_001300985
PTBP2hsa-miR-548ae-3p99.0597NM_001300985
PTBP2hsa-miR-548aq-3p99.0597NM_001300985
PTBP2hsa-miR-548ah-3p99.0597NM_001300985
PTBP2hsa-miR-477599.0585NM_001300986
PTBP2hsa-miR-548v98.9578NM_001300985
PTBP2hsa-miR-329-3p98.704NM_001300985
PTBP2hsa-miR-362-3p98.704NM_001300985
PTBP2hsa-miR-394198.0055NM_001300985
PTBP2hsa-miR-848597.8931NM_001300985
PTBP2hsa-miR-548ar-3p97.1972NM_001300985
PTBP2hsa-miR-548a-3p97.1492NM_001300985
PTBP2hsa-miR-548f-3p97.1492NM_001300985
PTBP2hsa-miR-548bc97.1492NM_001300985
PTBP2hsa-miR-590-3p96.9404NM_001300986
PTBP2hsa-miR-506-3p96.9177NM_001300985
PTBP2hsa-miR-124-3p96.9177NM_001300985
PTBP2hsa-miR-548az-3p96.6549NM_001300985
PTBP2hsa-miR-548e-3p96.6549NM_001300985
PTBP2hsa-miR-6768-3p96.5141NM_001300985
PTBP2hsa-miR-499a-5p95.9922NM_001300985
PTBP2hsa-miR-60395.9657NM_001300985
PTBP2hsa-miR-223-3p95.4606NM_001300986
PTBP2hsa-miR-505-3p94.7388NM_001300985
PTBP2hsa-miR-212-3p94.6237NM_001300985
PTBP2hsa-miR-132-3p94.6237NM_001300985
PTBP2hsa-miR-1260b94.1515NM_001300985
PTBP2hsa-miR-1260a94.1515NM_001300985
PTBP2hsa-miR-3622a-5p94.0225NM_001300985
PTBP2hsa-miR-3121-3p93.3855NM_001300986
PTBP2hsa-miR-472993.347NM_001300985
PTBP2hsa-miR-4722-5p93.2363NM_001300985
PTBP2hsa-miR-60793.0998NM_001300986
PTBP2hsa-miR-4691-3p92.6697NM_001300985
PTBP2hsa-miR-477392.271NM_001300986
PTBP2hsa-miR-3157-5p92.1139NM_001300985
PTBP2hsa-miR-548ac91.4226NM_001300985
PTBP2hsa-miR-548bb-3p91.4226NM_001300985
PTBP2hsa-miR-548h-3p91.4226NM_001300985
PTBP2hsa-miR-548d-3p91.4226NM_001300985
PTBP2hsa-miR-548z91.4226NM_001300985
PTBP2hsa-miR-1224-3p90.9736NM_001300985
PTBP2hsa-miR-428690.8726NM_001300985
PTBP2hsa-miR-612490.7105NM_001300985
PTBP2hsa-miR-3692-3p90.6216NM_001300986
PTBP2hsa-miR-5009-3p90.5933NM_001300986
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Motifs and transcription factors (TFs) regulating PTBP2

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
PTBP2metacluster_141.5NR3C1; THAP1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY2; YY2; ZNF597 (directAnnotation). YY1; YY1; YY1; YY2; ZFP42 (inferredBy_Orthology).
PTBP2kznf__ZFP57_Imbeault2017_RP_ChIP-seqZFP57 (directAnnotation).
PTBP2jaspar__MA1721.1ZNF93 (directAnnotation).
PTBP2metacluster_151.1KAT7; PML; SMAD5; TAF1; ZFP37; ZGPAT; ZNF519; ZNF519; ZNF571; ZNF770; ZNF770; ZNF770; ZSCAN22; ZSCAN22 (directAnnotation).
PTBP2kznf__ZNF548_Imbeault2017_RP_RCADEZNF548 (directAnnotation).
PTBP2dbtfbs__ZBTB8A_HEK293_ENCSR481FEC_merged_N1ZBTB8A (directAnnotation).
PTBP2transfac_pro__M01199TRIM28 (directAnnotation).
PTBP2metacluster_133.1ZNF304; ZNF304; ZSCAN22 (directAnnotation).
PTBP2dbtfbs__ZSCAN30_HEK293_ENCSR768VNZ_merged_N1ZSCAN30 (directAnnotation).
PTBP2flyfactorsurvey__Mad_FlyReg_FBgn0011648SMAD9 (inferredBy_Orthology).
PTBP2transfac_pro__M02913SP140 (inferredBy_Orthology).
PTBP2dbtfbs__ZNF407_representative_N1ZNF407 (directAnnotation).
PTBP2taipale_tf_pairs__TFAP2C_E2F8_NNTCCCGCNNNCCNNNGGC_CAP_reprE2F8; TFAP2C (directAnnotation).
PTBP2jaspar__MA0748.2YY2 (directAnnotation).
PTBP2swissregulon__hs__CHD1CHD1 (directAnnotation).
PTBP2homer__NANTGCSGCA_Zfp57ZFP57 (directAnnotation).
PTBP2transfac_pro__M01090SMAD9 (inferredBy_Orthology).
PTBP2kznf__ZNF311_Imbeault2017_OM_MEMEZNF311 (directAnnotation).
PTBP2taipale_cyt_meth__ZNF460_NRMCGCCCCCCGN_eDBD_methZNF460 (directAnnotation).
PTBP2jaspar__MA0535.1SMAD9 (inferredBy_Orthology).
PTBP2transfac_pro__M00938E2F1 (directAnnotation).
PTBP2transfac_pro__M04893TAF1 (directAnnotation).
PTBP2transfac_pro__M01088DEAF1 (inferredBy_Orthology).
PTBP2transfac_pro__M12697ZNF142 (directAnnotation).
PTBP2metacluster_175.1ZNF283 (directAnnotation).
PTBP2cisbp__M00788ZFY (inferredBy_Orthology).
PTBP2tfdimers__MD00364WT1 (directAnnotation).
PTBP2metacluster_126.3LIN28B; LIN28B (directAnnotation).
PTBP2transfac_pro__M02786PLAGL1 (inferredBy_Orthology).
PTBP2transfac_pro__M01973PLAG1 (directAnnotation).
PTBP2metacluster_67.2ZNF501 (directAnnotation). ACAA1; E2F2; E2F2; E2F3; E2F3; FOXN4 (inferredBy_Orthology).
PTBP2tfdimers__MD00483ZBTB14 (directAnnotation).
PTBP2metacluster_61.1DEAF1; DEAF1 (directAnnotation).
PTBP2hocomoco__XBP1_HUMAN.H11MO.0.DXBP1 (directAnnotation).
PTBP2taipale_tf_pairs__ETV5_HES7_NNCACGTGNNNNCCGGAANN_CAPETV5; HES7 (directAnnotation).
PTBP2metacluster_144.13HIC1; HIC1 (directAnnotation).
PTBP2transfac_pro__M00514ATF4 (directAnnotation).
PTBP2taipale_tf_pairs__E2F1_ELK1_SGCGCNNNNNNNNNNCGGAAGN_CAP_reprE2F1; ELK1 (directAnnotation).
PTBP2transfac_pro__M02898SMAD3 (directAnnotation).
PTBP2kznf__ZNF548_Imbeault2017_OM_RCADEZNF548 (directAnnotation).
PTBP2metacluster_135.8ZNF516; ZNF536 (inferredBy_Orthology).
PTBP2taipale_tf_pairs__GCM1_SPDEF_RTGNKGGCGGAWG_CAP_reprGCM1; SPDEF (directAnnotation).
PTBP2metacluster_196.3NR1H4; NR2F6; PRDM14; ZNF264; ZNF264 (directAnnotation). HNF4A; HNF4G; NR1D1; NR1D1; NR1D1; NR1D2; NR1D2; NR1D2; NR1H2; NR1H2; NR1H2; NR1H3; NR1H3; NR1H3; NR1I2; NR1I2; NR1I2; NR2C1; NR2C2; NR2F2; NR2F6; PPARA; PPARA; PPARA; PPARD; PPARD; PPARD; PPARG; PPARG; PPARG; RARA; RARA; RARA; RARB; RARB; RARB; RORA; RORA; RORA; RORB; RORB; RORB; RORC; RORC; RORC; RXRA; RXRB; RXRG; THRA; THRA; THRA; VDR; VDR; VDR (inferredBy_Orthology).
PTBP2hocomoco__ZFP57_MOUSE.H11MO.0.BZFP57 (inferredBy_Orthology).
PTBP2taipale_tf_pairs__TFAP2C_HES7_NNCRCGYGNNNNNNSCCNNNGGS_CAP_reprHES7; TFAP2C (directAnnotation).
PTBP2taipale_tf_pairs__ETV5_TCF3_RNCGGAAGNNNNNCASSTGN_CAP_reprETV5; TCF3 (directAnnotation).
PTBP2kznf__ZNF213_Schmitges2016_RCADEZNF213 (directAnnotation).
PTBP2metacluster_126.4ZNF12; ZNF12; ZNF44; ZNF563; ZNF93 (directAnnotation).
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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.

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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.



1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."