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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene (This gene does not contain this module)

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor (This gene does not contain this module)

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Acts as a drug target< (This gene does not contain this module)

Gene: PRRG4

Summary for PRRG4

Gene informationGene symbol

PRRG4

Ensembl ID

ENSG00000135378

Entrez ID

79056

Gene nameproline rich and Gla domain 4
SynonymsTMG4
Gene typeprotein_coding
UniProtAcc

Q9BZD6


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Dataset with differentially expressed gene: PRRG4

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE175716

PDXTumor tissueLiver cancerAdvanced hepatocellular carcinomaTargeted therapysorafenibNAMalignant cells-0.7491480.00e+00

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Expression of PRRG4 in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to PRRG4

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.

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MicroRNAs (miRNA) regulating PRRG4

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
PRRG4hsa-miR-561-3p97.3843NM_024081
PRRG4hsa-miR-4778-3p97.0102NM_024081
PRRG4hsa-miR-4659b-3p95.6933NM_024081
PRRG4hsa-miR-4659a-3p95.6933NM_024081
PRRG4hsa-miR-3613-3p95.6363NM_024081
PRRG4hsa-miR-5580-3p93.731NM_024081
PRRG4hsa-miR-128391.3243NM_024081
PRRG4hsa-miR-427290.1916NM_024081
PRRG4hsa-miR-335-3p88.9995NM_024081
PRRG4hsa-miR-451788.0778NM_024081
PRRG4hsa-miR-1213687.4261NM_024081
PRRG4hsa-miR-511-3p86.9009NM_024081
PRRG4hsa-miR-60786.3652NM_024081
PRRG4hsa-miR-4433a-3p85.1848NM_024081
PRRG4hsa-miR-392484.87NM_024081
PRRG4hsa-miR-6841-3p83.2439NM_024081
PRRG4hsa-miR-508-5p82.6323NM_024081
PRRG4hsa-miR-7151-3p82.4914NM_024081
PRRG4hsa-miR-3194-3p81.8548NM_024081
PRRG4hsa-miR-314881.7959NM_024081
PRRG4hsa-miR-590-3p81.5584NM_024081
PRRG4hsa-miR-76581.5149NM_024081
PRRG4hsa-miR-302c-5p81.4414NM_024081
PRRG4hsa-miR-4799-5p81.0903NM_024081
PRRG4hsa-miR-990081.0504NM_024081
PRRG4hsa-miR-58380.752NM_024081
PRRG4hsa-miR-7154-5p80.2521NM_024081
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Motifs and transcription factors (TFs) regulating PRRG4

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
PRRG4metacluster_135.11NR2C2 (directAnnotation).
PRRG4metacluster_135.10MBD2; MBD2; MECP2; MECP2 (directAnnotation).
PRRG4tfdimers__MD00038TFAP2C (directAnnotation).
PRRG4metacluster_144.3ZNF704; ZNF704 (directAnnotation).
PRRG4metacluster_7.13ZFX (directAnnotation).
PRRG4kznf__ZNF730_Imbeault2017_RP_RCADEZNF730 (directAnnotation).
PRRG4cisbp__M00968MTF2 (directAnnotation).
PRRG4metacluster_155.23BCL11B; ZNF711; ZNF711 (directAnnotation). ZFY (inferredBy_Orthology).
PRRG4metacluster_160.20JUND; PRDM15 (directAnnotation).
PRRG4cisbp__M00341PAX6 (directAnnotation).
PRRG4metacluster_198.3ZFP64 (directAnnotation).
PRRG4metacluster_141.5NR3C1; THAP1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY2; YY2; ZNF597 (directAnnotation). YY1; YY1; YY1; YY2; ZFP42 (inferredBy_Orthology).
PRRG4metacluster_151.1KAT7; PML; SMAD5; TAF1; ZFP37; ZGPAT; ZNF519; ZNF519; ZNF571; ZNF770; ZNF770; ZNF770; ZSCAN22; ZSCAN22 (directAnnotation).
PRRG4jaspar__MA0185.1DEAF1 (inferredBy_Orthology).
PRRG4metacluster_61.1DEAF1; DEAF1 (directAnnotation).
PRRG4cisbp__M00788ZFY (inferredBy_Orthology).
PRRG4kznf__ZNF213_Schmitges2016_RCADEZNF213 (directAnnotation).
PRRG4metacluster_175.1ZNF283 (directAnnotation).
PRRG4hdpi__ZNF304ZNF304 (directAnnotation).
PRRG4transfac_pro__M02844BCL6B (inferredBy_Orthology).
PRRG4metacluster_125.2TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2D; TFAP2D; TFAP2D; TFAP2E; TFAP2E; TFAP2E; TFAP2E; TFAP2E; TFAP2E; ZNF611; ZNF611 (directAnnotation). TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2D; TFAP2D; TFAP2D; TFAP2D; TFAP2D; TFAP2D; TFAP2E; TFAP2E; TFAP2E; TFAP2E; TFAP2E; TFAP2E; TFAP2E (inferredBy_Orthology).
PRRG4metacluster_133.1ZNF304; ZNF304; ZSCAN22 (directAnnotation).
PRRG4transfac_pro__M01199TRIM28 (directAnnotation).
PRRG4kznf__ZNF682_Isakova2017_SMiLE-seqZNF682 (directAnnotation).
PRRG4metacluster_151.2ZNF23 (directAnnotation).
PRRG4transfac_public__M00189TFAP2A; TFAP2B; TFAP2C (directAnnotation).
PRRG4transfac_pro__M01219SP1 (directAnnotation). SP3 (inferredBy_Orthology).
PRRG4transfac_pro__M03806ZBTB7C (directAnnotation).
PRRG4transfac_pro__M00915TFAP2A; TFAP2B; TFAP2C (directAnnotation).
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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.

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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.



1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."