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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene (This gene does not contain this module)

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor (This gene does not contain this module)

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Acts as a drug target< (This gene does not contain this module)

Gene: PPM1D

Summary for PPM1D

Gene informationGene symbol

PPM1D

Ensembl ID

ENSG00000170836

Entrez ID

8493

Gene nameprotein phosphatase, Mg2+/Mn2+ dependent 1D
SynonymsPP2C-DELTA|Wip1
Gene typeprotein_coding
UniProtAcc

NA


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Dataset with differentially expressed gene: PPM1D

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE138267

CDXTumor tissueLung cancerSmall cell lung cancer (SCLC)ChemotherapyNANAMalignant cells0.3276490.00e+00

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Expression of PPM1D in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to PPM1D

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.

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MicroRNAs (miRNA) regulating PPM1D

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
PPM1Dhsa-miR-1213699.2815NM_003620
PPM1Dhsa-miR-4680-3p98.641NM_003620
PPM1Dhsa-miR-5692a98.462NM_003620
PPM1Dhsa-miR-892a96.7223NM_003620
PPM1Dhsa-miR-30095.2929NM_003620
PPM1Dhsa-miR-381-3p95.2929NM_003620
PPM1Dhsa-miR-92194.4429NM_003620
PPM1Dhsa-miR-32-3p93.8606NM_003620
PPM1Dhsa-miR-548ar-3p93.4952NM_003620
PPM1Dhsa-miR-217-5p93.2283NM_003620
PPM1Dhsa-miR-316393.0245NM_003620
PPM1Dhsa-miR-6779-3p92.9238NM_003620
PPM1Dhsa-miR-29a-5p92.4905NM_003620
PPM1Dhsa-miR-2115-3p92.255NM_003620
PPM1Dhsa-miR-873-3p92.1146NM_003620
PPM1Dhsa-miR-98-3p90.6259NM_003620
PPM1Dhsa-let-7a-3p90.6259NM_003620
PPM1Dhsa-let-7f-1-3p90.6259NM_003620
PPM1Dhsa-let-7b-3p90.6259NM_003620
PPM1Dhsa-miR-548f-3p90.0526NM_003620
PPM1Dhsa-miR-548bc90.0526NM_003620
PPM1Dhsa-miR-548e-3p90.0526NM_003620
PPM1Dhsa-miR-548a-3p90.0526NM_003620
PPM1Dhsa-miR-548az-3p90.0526NM_003620
PPM1Dhsa-miR-205-3p89.5544NM_003620
PPM1Dhsa-miR-6807-3p89.4725NM_003620
PPM1Dhsa-miR-4699-3p89.075NM_003620
PPM1Dhsa-miR-1468-3p88.6116NM_003620
PPM1Dhsa-miR-548g-3p88.2592NM_003620
PPM1Dhsa-miR-4687-5p88.152NM_003620
PPM1Dhsa-miR-391187.669NM_003620
PPM1Dhsa-miR-128387.5354NM_003620
PPM1Dhsa-miR-147a84.9239NM_003620
PPM1Dhsa-miR-5187-5p84.3652NM_003620
PPM1Dhsa-miR-155-5p84.2145NM_003620
PPM1Dhsa-miR-3065-3p83.7399NM_003620
PPM1Dhsa-miR-60683.24NM_003620
PPM1Dhsa-miR-568883.1613NM_003620
PPM1Dhsa-miR-495-3p83.1613NM_003620
PPM1Dhsa-miR-449982.8882NM_003620
PPM1Dhsa-miR-616-5p82.6013NM_003620
PPM1Dhsa-miR-153-3p82.1734NM_003620
PPM1Dhsa-miR-203b-3p81.7908NM_003620
PPM1Dhsa-miR-33a-3p81.5296NM_003620
PPM1Dhsa-miR-767-5p80.6984NM_003620
PPM1Dhsa-miR-442580.679NM_003620
PPM1Dhsa-miR-10527-5p80.6455NM_003620
PPM1Dhsa-miR-373-5p80.6275NM_003620
PPM1Dhsa-miR-371b-5p80.6275NM_003620
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Motifs and transcription factors (TFs) regulating PPM1D

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
PPM1Dtaipale_tf_pairs__GCM1_SPDEF_RTGNKGGCGGAWG_CAP_reprGCM1; SPDEF (directAnnotation).
PPM1Dtransfac_pro__M01219SP1 (directAnnotation). SP3 (inferredBy_Orthology).
PPM1Dtransfac_pro__M07397ZNF148 (directAnnotation).
PPM1Dmetacluster_131.7EGR1; EGR1; EGR1; EGR1; EGR1; EGR1; EGR1; EGR1; EGR1; EGR1; EGR1; EGR1; EGR1; EGR1; EGR1; EGR1; EGR1; EGR2; EGR2; EGR2; EGR2; EGR2; EGR2; EGR3; EGR3; EGR3; EGR3; EGR3; EGR3; EGR4; EGR4; WT1 (directAnnotation). EGR1; EGR1; EGR1; EGR1; EGR1; EGR2; EGR2; EGR2; EGR2; EGR2; EGR3; EGR3; WT1; ZBTB43; ZBTB43; ZBTB43; ZBTB43; ZBTB5; ZBTB5; ZBTB5; ZBTB5; ZBTB7A; ZBTB7A; ZBTB7A; ZBTB7A; ZNF367; ZNF367; ZNF367; ZNF367; ZNF740; ZNF740; ZNF740; ZNF740 (inferredBy_Orthology).
PPM1Dmetacluster_131.4EGR2; EGR2; ZFHX2; ZNF141 (directAnnotation).
PPM1Dtaipale_cyt_meth__ZNF281_NCCCCTCCCCCN_eDBD_methZNF281 (directAnnotation).
PPM1Dmetacluster_15.2E2F1; E2F1; E2F1; E2F1; E2F1; E2F3; E2F4; E2F4; E2F4; E2F6; E2F6; E2F6; E2F6; E2F6; E2F6; E2F6; E2F7; TFDP1; TFDP2; ZNF566; ZNF566; ZNF574 (directAnnotation). E2F3; E2F3; E2F4 (inferredBy_Orthology).
PPM1Dmetacluster_7.13ZFX (directAnnotation).
PPM1Dmetacluster_3.11SP1; SP1; SP2; SP3; SP3; SP4 (directAnnotation).
PPM1Dhomer__GGGGGGGG_MazMAZ (directAnnotation).
PPM1Dtransfac_pro__M01175ZBTB7B (directAnnotation).
PPM1Dtaipale_cyt_meth__ZNF460_NRMCGCCCCCCGN_eDBD_methZNF460 (directAnnotation).
PPM1Dtfdimers__MD00151CHURC1 (directAnnotation).
PPM1Dmetacluster_3.7SP1; SP1; SP1; SP1; SP1; SP1; SP1; SP1; SP2; SP2; SP2; SP2; SP3; SP3; SP3; SP4; SP4; SP4; SP4; SP4; SP4; SP5 (directAnnotation).
PPM1Dmetacluster_15.1E2F4; E2F4; E2F4; E2F4; E2F7; ZFP69B (directAnnotation). E2F4 (inferredBy_Orthology).
PPM1Dmetacluster_141.5NR3C1; THAP1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY2; YY2; ZNF597 (directAnnotation). YY1; YY1; YY1; YY2; ZFP42 (inferredBy_Orthology).
PPM1Dswissregulon__hs__CHD1CHD1 (directAnnotation).
PPM1Dtransfac_pro__M02090E2F4 (directAnnotation).
PPM1Dtransfac_pro__M01714KLF15 (directAnnotation).
PPM1Dmetacluster_15.3E2F1; E2F6; E2F8; E2F8; TFDP1 (directAnnotation). E2F3 (inferredBy_Orthology).
PPM1Djaspar__MA1122.1TFDP1 (directAnnotation).
PPM1Dhocomoco__PROX1_HUMAN.H11MO.0.DPROX1 (directAnnotation).
PPM1Dtransfac_pro__M02089E2F3 (directAnnotation).
PPM1Dmetacluster_3.14WT1; WT1 (directAnnotation).
PPM1Dmetacluster_126.3LIN28B; LIN28B (directAnnotation).
PPM1Dhocomoco__EGR4_HUMAN.H11MO.0.DEGR4 (directAnnotation).
PPM1Dmetacluster_3.5KLF14; KLF15; KLF15; KLF16 (directAnnotation).
PPM1Dcisbp__M07938E2F1 (directAnnotation).
PPM1Dhomer__GGCGGGAARN_E2F6E2F6 (directAnnotation).
PPM1Dtransfac_pro__M07436WT1 (directAnnotation).
PPM1Dtransfac_pro__M02281SP1 (directAnnotation).
PPM1Dtaipale_tf_pairs__GCM1_ELF1_GTGCGGGCGGAAGTN_CAP_reprELF1; GCM1 (directAnnotation).
PPM1Dkznf__ZNF730_Imbeault2017_RP_RCADEZNF730 (directAnnotation).
PPM1Dtransfac_pro__M02898SMAD3 (directAnnotation).
PPM1Dtransfac_public__M00491PATZ1 (directAnnotation).
PPM1Dtransfac_pro__M07461KLF1; KLF10; KLF11; KLF12; KLF13; KLF15; KLF16; KLF17; KLF2; KLF3; KLF4; KLF5; KLF6; KLF7; KLF8; KLF9 (directAnnotation).
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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.

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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.



1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."