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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene (This gene does not contain this module)

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor (This gene does not contain this module)

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Acts as a drug target< (This gene does not contain this module)

Gene: PICALM

Summary for PICALM

Gene informationGene symbol

PICALM

Ensembl ID

ENSG00000073921

Entrez ID

8301

Gene namephosphatidylinositol binding clathrin assembly protein
SynonymsCALM|CLTH
Gene typeprotein_coding
UniProtAcc

Q13492


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Dataset with differentially expressed gene: PICALM

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE199333

patientsBone marrow aspirateAcute myeloid leukemiaPrimary FLT3-ITD-mutated acute myeloid leukemia (AML)Targeted therapygilteritinibpreErythrocytes0.3472993.80e-11

GSE131984_JQ1Pal

SUM159 cell lineCell lineBreast cancerTriple-negative breast cancer (TNBC)Targeted therapyJQ1 + palbociclibNAMalignant cells0.2647891.45e-11

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Expression of PICALM in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to PICALM

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.

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MicroRNAs (miRNA) regulating PICALM

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
PICALMhsa-miR-570099.6407NM_001206946
PICALMhsa-miR-651-3p97.1414NM_001008660
PICALMhsa-miR-1250-3p96.757NM_001206946
PICALMhsa-miR-447395.6541NM_001008660
PICALMhsa-miR-311594.0809NM_001008660
PICALMhsa-miR-376c-5p93.5915NM_001206946
PICALMhsa-miR-376b-5p93.5915NM_001206946
PICALMhsa-miR-30a-5p93.2038NM_001206946
PICALMhsa-miR-30e-5p93.2038NM_001206946
PICALMhsa-miR-30c-5p93.2038NM_001206946
PICALMhsa-miR-30b-5p93.2038NM_001206946
PICALMhsa-miR-30d-5p93.2038NM_001206946
PICALMhsa-miR-5584-5p93.1458NM_001008660
PICALMhsa-miR-6885-3p92.968NM_001206946
PICALMhsa-miR-541-5p92.6835NM_001206946
PICALMhsa-miR-449592.4266NM_001206946
PICALMhsa-miR-4760-3p92.3223NM_001008660
PICALMhsa-miR-311992.2421NM_001008660
PICALMhsa-miR-4716-5p91.7292NM_001206946
PICALMhsa-miR-548g-3p91.7058NM_001206946
PICALMhsa-miR-122b-5p91.6024NM_001008660
PICALMhsa-miR-569191.2105NM_001008660
PICALMhsa-miR-6805-3p91.2105NM_001008660
PICALMhsa-miR-6864-5p91.1725NM_001206946
PICALMhsa-miR-338-5p90.538NM_001206946
PICALMhsa-miR-548at-5p90.2914NM_001008660
PICALMhsa-miR-7-2-3p89.8199NM_001008660
PICALMhsa-miR-7-1-3p89.8199NM_001008660
PICALMhsa-miR-117989.454NM_001206946
PICALMhsa-miR-4524a-3p89.3314NM_001008660
PICALMhsa-miR-664a-3p89.2372NM_001008660
PICALMhsa-miR-5582-5p89.155NM_001008660
PICALMhsa-miR-568888.4937NM_001206946
PICALMhsa-miR-3190-3p87.9858NM_001008660
PICALMhsa-miR-314887.9048NM_001008660
PICALMhsa-miR-368587.7876NM_001206946
PICALMhsa-miR-475287.1279NM_001008660
PICALMhsa-miR-520f-3p87.1165NM_001008660
PICALMhsa-miR-316186.6362NM_001206946
PICALMhsa-miR-6891-5p86.4071NM_001206946
PICALMhsa-miR-38486.3124NM_001206946
PICALMhsa-miR-428286.1279NM_001206946
PICALMhsa-miR-495-3p85.9937NM_001206946
PICALMhsa-miR-42985.3723NM_001206946
PICALMhsa-miR-513b-3p85.2348NM_001206946
PICALMhsa-miR-129084.8456NM_001206946
PICALMhsa-miR-4709-5p84.5225NM_001008660
PICALMhsa-miR-3121-3p84.516NM_001008660
PICALMhsa-miR-4728-3p84.4919NM_001206946
PICALMhsa-miR-441884.2835NM_001008660
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Motifs and transcription factors (TFs) regulating PICALM

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
PICALMhdpi__TIMELESSTIMELESS (directAnnotation).
PICALMtaipale_tf_pairs__GCM2_HES7_RTRNKGGTNNNGCACGYGNN_CAP_reprGCM2; HES7 (directAnnotation).
PICALMmetacluster_135.10MBD2; MBD2; MECP2; MECP2 (directAnnotation).
PICALMjaspar__MA1122.1TFDP1 (directAnnotation).
PICALMtaipale_tf_pairs__GCM1_FIGLA_CASSTGNNNNNNNNNNTGCGGG_CAP_reprFIGLA; GCM1 (directAnnotation).
PICALMtaipale_tf_pairs__ETV5_TCF3_RNCGGAAGNNNNNCASSTGN_CAP_reprETV5; TCF3 (directAnnotation).
PICALMtransfac_pro__M01253CNOT3 (directAnnotation).
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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.

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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.



1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."