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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene (This gene does not contain this module)

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor (This gene does not contain this module)

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Acts as a drug target< (This gene does not contain this module)

Gene: PFDN4

Summary for PFDN4

Gene informationGene symbol

PFDN4

Ensembl ID

ENSG00000101132

Entrez ID

5203

Gene nameprefoldin subunit 4
SynonymsC-1|C1|PFD4
Gene typeprotein_coding
UniProtAcc

Q9NQP4


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Dataset with differentially expressed gene: PFDN4

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE140440

DU145 and PC cell linesCell lineProstate cancerProstate cancerChemotherapydocetaxelNAMalignant cells0.6093832.79e-11

GSE186960

Panc1 cell lineCell linePancreatic cancerPancreatic ductal adenocarcinoma (PDAC)ChemotherapygemcitabineNAMalignant cells-0.6716160.00e+00

GSE108397

451Lu cell lineCell lineMelanomaMelanomaTargeted therapyPLX-4720NAMalignant cells0.4432870.00e+00

GSE164897_VemCob

A375 cell lineCell lineMelanomaBRAFV600E-mutant melanomaTargeted therapyvemurafenib + combimetinibNAMalignant cells-0.8714160.00e+00

GSE164897_VemTra

A375 cell lineCell lineMelanomaB+E2:E57RAFV600E-mutant melanomaTargeted therapyvemurafenib + trametinibNAMalignant cells-0.5962030.00e+00

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Expression of PFDN4 in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to PFDN4

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.

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MicroRNAs (miRNA) regulating PFDN4

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
PFDN4hsa-miR-316399.6565NM_002623
PFDN4hsa-miR-5692a99.1209NM_002623
PFDN4hsa-miR-58795.111NM_002623
PFDN4hsa-miR-411-3p94.8212NM_002623
PFDN4hsa-miR-379-3p94.8212NM_002623
PFDN4hsa-miR-1468-3p93.5527NM_002623
PFDN4hsa-miR-365891.8226NM_002623
PFDN4hsa-miR-7-1-3p91.7311NM_002623
PFDN4hsa-miR-7-2-3p91.7311NM_002623
PFDN4hsa-miR-4799-5p91.7064NM_002623
PFDN4hsa-miR-885-5p90.8452NM_002623
PFDN4hsa-miR-449590.4977NM_002623
PFDN4hsa-miR-579-3p90.1078NM_002623
PFDN4hsa-miR-664b-3p90.1078NM_002623
PFDN4hsa-miR-1213689.2334NM_002623
PFDN4hsa-miR-129788.7599NM_002623
PFDN4hsa-miR-6740-3p88.5605NM_002623
PFDN4hsa-miR-364686.5073NM_002623
PFDN4hsa-miR-26b-5p86.2642NM_002623
PFDN4hsa-miR-26a-5p86.2642NM_002623
PFDN4hsa-miR-428284.9831NM_002623
PFDN4hsa-miR-548x-5p84.8854NM_002623
PFDN4hsa-miR-548g-5p84.8854NM_002623
PFDN4hsa-miR-548f-5p84.8854NM_002623
PFDN4hsa-miR-548aj-5p84.8854NM_002623
PFDN4hsa-miR-548ad-3p83.8801NM_002623
PFDN4hsa-miR-446583.0947NM_002623
PFDN4hsa-miR-5692c82.1013NM_002623
PFDN4hsa-miR-5692b82.1013NM_002623
PFDN4hsa-miR-56781.9116NM_002623
PFDN4hsa-miR-6771-3p81.3292NM_002623
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Motifs and transcription factors (TFs) regulating PFDN4

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
PFDN4taipale_tf_pairs__ETV5_EOMES_TNRCACCGGAWN_CAPEOMES; ETV5 (directAnnotation).
PFDN4taipale_tf_pairs__HOXB2_ETV4_ACCGGAAATGAN_CAPETV4; HOXB2 (directAnnotation).
PFDN4taipale_tf_pairs__ETV5_EVX1_RSCGGWAATKR_CAPETV5; EVX1 (directAnnotation).
PFDN4metacluster_182.10ZFX (directAnnotation).
PFDN4taipale_tf_pairs__HOXB2_ETV1_ACCGGAAATGA_CAPETV1; HOXB2 (directAnnotation).
PFDN4taipale_tf_pairs__TEAD4_ETV1_RSCGGAAATRCM_CAPETV1; TEAD4 (directAnnotation).
PFDN4taipale_tf_pairs__TEAD4_ERG_RSCGGAAATRCC_CAPERG; TEAD4 (directAnnotation).
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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.

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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.



1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."