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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene (This gene does not contain this module)

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor (This gene does not contain this module)

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Acts as a drug target< (This gene does not contain this module)

Gene: PDS5A

Summary for PDS5A

Gene informationGene symbol

PDS5A

Ensembl ID

ENSG00000121892

Entrez ID

23244

Gene namePDS5 cohesin associated factor A
SynonymsKIAA0648|PIG54|SCC-112
Gene typeprotein_coding
UniProtAcc

Q29RF7


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Dataset with differentially expressed gene: PDS5A

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE139386

H3122 cell lineCell lineLung cancerEML4-ALK fusion-positive non-small cell lung cancer (NSCLC)Targeted therapyceritinibNAMalignant cells-0.3975110.00e+00

GSE131984_JQ1Pac

SUM159 cell lineCell lineBreast cancerTriple-negative breast cancer (TNBC)Targeted therapyJQ1 + paclitaxelNAMalignant cells-0.31485.96e-10

GSE108397

451Lu cell lineCell lineMelanomaMelanomaTargeted therapyPLX-4720NAMalignant cells-0.3464560.00e+00

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Expression of PDS5A in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to PDS5A

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.

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MicroRNAs (miRNA) regulating PDS5A

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
PDS5Ahsa-miR-7110-3p99.3NM_001100399
PDS5Ahsa-miR-451799.1722NM_001100399
PDS5Ahsa-miR-651-3p98.7778NM_001100399
PDS5Ahsa-miR-548h-3p98.5684NM_001100399
PDS5Ahsa-miR-548ac98.5684NM_001100399
PDS5Ahsa-miR-548bb-3p98.5684NM_001100399
PDS5Ahsa-miR-548z98.5684NM_001100399
PDS5Ahsa-miR-548d-3p98.5684NM_001100399
PDS5Ahsa-miR-548c-3p98.5374NM_001100399
PDS5Ahsa-miR-493-5p98.3936NM_001100399
PDS5Ahsa-miR-4728-3p98.3325NM_001100399
PDS5Ahsa-miR-392197.8058NM_001100399
PDS5Ahsa-miR-4653-5p97.2178NM_001100399
PDS5Ahsa-miR-6733-3p97.0454NM_001100399
PDS5Ahsa-miR-548x-3p96.4758NM_001100399
PDS5Ahsa-miR-548aj-3p96.4758NM_001100399
PDS5Ahsa-miR-548aw96.0491NM_001100399
PDS5Ahsa-miR-3944-5p95.653NM_001100399
PDS5Ahsa-miR-1250-3p95.3968NM_001100399
PDS5Ahsa-miR-548am-3p95.2859NM_001100399
PDS5Ahsa-miR-548aq-3p95.2859NM_001100399
PDS5Ahsa-miR-548ae-3p95.2859NM_001100399
PDS5Ahsa-miR-548ah-3p95.2859NM_001100399
PDS5Ahsa-miR-548j-3p95.2859NM_001100399
PDS5Ahsa-miR-50794.7745NM_001100399
PDS5Ahsa-miR-1910-3p94.694NM_001100399
PDS5Ahsa-miR-6511a-5p94.2448NM_001100399
PDS5Ahsa-miR-6822-3p94.2381NM_001100399
PDS5Ahsa-miR-153-5p94.117NM_001100399
PDS5Ahsa-miR-472993.8766NM_001100399
PDS5Ahsa-miR-548t-3p93.7287NM_001100399
PDS5Ahsa-miR-548ap-3p93.7287NM_001100399
PDS5Ahsa-miR-548aa93.7287NM_001100399
PDS5Ahsa-miR-301b-5p93.4215NM_001100399
PDS5Ahsa-miR-301a-5p93.4215NM_001100399
PDS5Ahsa-miR-372-5p93.1137NM_001100399
PDS5Ahsa-miR-6516-5p93.0798NM_001100399
PDS5Ahsa-miR-450b-5p92.7448NM_001100399
PDS5Ahsa-miR-3680-3p92.7448NM_001100399
PDS5Ahsa-miR-44892.6256NM_001100399
PDS5Ahsa-miR-146a-3p92.5278NM_001100399
PDS5Ahsa-miR-444392.2526NM_001100399
PDS5Ahsa-miR-60392.2361NM_001100399
PDS5Ahsa-miR-4693-3p91.9958NM_001100400
PDS5Ahsa-miR-548aj-5p91.8162NM_001100399
PDS5Ahsa-miR-548g-5p91.8162NM_001100399
PDS5Ahsa-miR-548f-5p91.8162NM_001100399
PDS5Ahsa-miR-548x-5p91.8162NM_001100399
PDS5Ahsa-miR-607191.7519NM_001100399
PDS5Ahsa-miR-55791.4276NM_001100399
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Motifs and transcription factors (TFs) regulating PDS5A

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
PDS5Ametacluster_7.13ZFX (directAnnotation).
PDS5Acisbp__M01863ZNF711 (inferredBy_Orthology).
PDS5Atransfac_pro__M05578ZFP92 (inferredBy_Orthology).
PDS5Ametacluster_151.2ZNF23 (directAnnotation).
PDS5Ametacluster_170.2KLF1; KLF10; KLF10; KLF11; KLF11; KLF11; KLF12; KLF12; KLF14; KLF15; KLF17; KLF2; KLF5; KLF7; KLF7; KLF8; MAZ; MAZ; PATZ1; SP1; SP1; SP1; SP2; SP2; SP2; SP2; SP2; SP2; SP2; SP2; SP4; SP4; SP5; SP6; SP7; SP8; SP9; ZNF281 (directAnnotation). E2F1; E2F4; KLF10; KLF13; KLF14; KLF17; KLF2; KLF7; SP1; SP1; SP3; SP4; SP5; SP6; SP7 (inferredBy_Orthology).
PDS5Ametacluster_155.23BCL11B; ZNF711; ZNF711 (directAnnotation). ZFY (inferredBy_Orthology).
PDS5Akznf__ZNF783_Imbeault2017_OM_MEMEZNF783 (directAnnotation).
PDS5Ametacluster_144.3ZNF704; ZNF704 (directAnnotation).
PDS5Ahomer__TWVGGTCCGC_HINFPHINFP (directAnnotation).
PDS5Ametacluster_135.10MBD2; MBD2; MECP2; MECP2 (directAnnotation).
PDS5Adbtfbs__E2F8_representative_N1E2F8 (directAnnotation).
PDS5Atransfac_pro__M04950EGR1 (directAnnotation).
PDS5Ametacluster_15.3E2F1; E2F6; E2F8; E2F8; TFDP1 (directAnnotation). E2F3 (inferredBy_Orthology).
PDS5Ataipale_tf_pairs__ETV2_HES7_NNCACGTGNNNNNCGGAWRY_CAP_reprETV2; HES7 (directAnnotation).
PDS5Ataipale_cyt_meth__E2F2_GCGCGCGCGYW_eDBD_reprE2F2 (directAnnotation).
PDS5Ametacluster_197.2E2F4; E2F7; E2F7; E2F7; E2F8; E2F8 (directAnnotation).
PDS5Acisbp__M08198ELF1 (directAnnotation).
PDS5Atransfac_pro__M00652NRF1 (directAnnotation).
PDS5Ataipale_tf_pairs__E2F1_HES7_RRCRCGYGYNNNNSGCGCSN_CAP_reprE2F1; HES7 (directAnnotation).
PDS5Atransfac_pro__M04866HDAC2 (directAnnotation).
PDS5Ajaspar__MA1122.1TFDP1 (directAnnotation).
PDS5Aswissregulon__hs__ZBTB14ZBTB14 (directAnnotation).
PDS5Ahdpi__ETV4ETV4 (directAnnotation).
PDS5Ahdpi__TP73TP73 (directAnnotation).
PDS5Ahdpi__ELF2ELF2 (directAnnotation).
PDS5Ataipale_tf_pairs__FOXO1_ELK1_TGTTGCCGGANNN_CAPELK1; FOXO1 (directAnnotation).
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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.

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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.



1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."