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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene (This gene does not contain this module)

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor (This gene does not contain this module)

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Acts as a drug target< (This gene does not contain this module)

Gene: PDPN

Summary for PDPN

Gene informationGene symbol

PDPN

Ensembl ID

ENSG00000162493

Entrez ID

10630

Gene namepodoplanin
Synonymsaggrus|D2-40|Gp38|GP40|PA2.26|T1A-2
Gene typeprotein_coding
UniProtAcc

Q86YL7


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Dataset with differentially expressed gene: PDPN

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE131984_Pal

SUM159 cell lineCell lineBreast cancerTriple-negative breast cancer (TNBC)Targeted therapypalbociclibNAMalignant cells0.49388.93e-24

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Expression of PDPN in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to PDPN

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.

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MicroRNAs (miRNA) regulating PDPN

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
PDPNhsa-miR-3124-3p92.9261NM_006474
PDPNhsa-miR-182792.908NM_006474
PDPNhsa-miR-199b-5p91.8987NM_001006624
PDPNhsa-miR-199a-5p91.8987NM_001006624
PDPNhsa-miR-6830-3p91.4797NM_006474
PDPNhsa-miR-519189.05NM_006474
PDPNhsa-miR-548aw86.5526NM_006474
PDPNhsa-miR-361885.6501NM_006474
PDPNhsa-miR-6740-3p83.3193NM_006474
PDPNhsa-miR-6878-5p81.9142NM_006474
PDPNhsa-miR-7106-5p81.8654NM_006474
PDPNhsa-miR-1212681.7197NM_001006624
PDPNhsa-miR-3120-3p81.1916NM_006474
PDPNhsa-miR-203a-3p80.6269NM_006474
Page: 1

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Motifs and transcription factors (TFs) regulating PDPN

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
PDPNtaipale_tf_pairs__HOXB13_ONECUT2_NNNRTAAAWATYGAYY_CAPHOXB13; ONECUT2 (directAnnotation).
PDPNjaspar__MA1125.1ZNF384 (directAnnotation).
PDPNtransfac_pro__M07270TEAD4 (directAnnotation).
Page: 1

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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.

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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.



1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."