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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene (This gene does not contain this module)

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor (This gene does not contain this module)

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Acts as a drug target< (This gene does not contain this module)

Gene: PCBP2

Summary for PCBP2

Gene informationGene symbol

PCBP2

Ensembl ID

ENSG00000197111

Entrez ID

5094

Gene namepoly(rC) binding protein 2
SynonymshnRNP-E2|HNRNPE2|HNRPE2
Gene typeprotein_coding
UniProtAcc

Q15366


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Dataset with differentially expressed gene: PCBP2

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE169246_PacBlood

patientsPeripheral blood mononuclear cellsBreast cancerAdvanced triple-negative breast cancer (TNBC)ChemotherapypaclitaxelpostProgenitors0.5580411.38e-04

GSE169246_PacAteBlood

patientsPeripheral blood mononuclear cellsBreast cancerAdvanced triple-negative breast cancer (TNBC)Immunotherapyatezolizumab + paclitaxelpostMono/Macro0.3360280.00e+00

GSE197268_Axi-cel

patientsPeripheral blood mononuclear cellsAcute lymphoblastic leukemiaLarge B-cell acute lymphoblastic leukemia (B-ALL)Immunotherapyaxi-cel (CAR-T)postCD4+ T cells-0.2878991.32e-25

GSE197268_Axi-cel

patientsPeripheral blood mononuclear cellsAcute lymphoblastic leukemiaLarge B-cell acute lymphoblastic leukemia (B-ALL)Immunotherapyaxi-cel (CAR-T)postcDCs0.5780391.51e-10

GSE164551

patientsBone marrow aspirateMultiple myelomaRefractory multiple myeloma (MM)ImmunotherapyCAR-TNAErythrocytes-0.5215373.45e-29

GSE164237

patientsPeripheral blood mononuclear cellsMelanomaAdvanced stages of melanoma ImmunotherapypembrolizumabpreCD8+ T cells-0.4117420.00e+00

GSE189460

patientsBone marrow aspirateMultiple myelomaMultiple myeloma (MM)Targeted therapybortezomib + melphalan + prednisolonepreErythrocytes-0.3238651.00e-24

GSE161801_PI

patientsBone marrow aspirateMultiple myelomaRefractory multiple myeloma (MM)Targeted therapycarfilzomib + dexamethasonepreMalignant cells0.4000716.80e-24

GSE139386

H3122 cell lineCell lineLung cancerEML4-ALK fusion-positive non-small cell lung cancer (NSCLC)Targeted therapyceritinibNAMalignant cells0.2590290.00e+00

GSE199333

patientsBone marrow aspirateAcute myeloid leukemiaPrimary FLT3-ITD-mutated acute myeloid leukemia (AML)Targeted therapygilteritinibpostNK cells-0.3744520.00e+00

GSE199333

patientsBone marrow aspirateAcute myeloid leukemiaPrimary FLT3-ITD-mutated acute myeloid leukemia (AML)Targeted therapygilteritinibpostCD8+ T cells-0.297720.00e+00

GSE199333

patientsBone marrow aspirateAcute myeloid leukemiaPrimary FLT3-ITD-mutated acute myeloid leukemia (AML)Targeted therapygilteritinibpostMalignant cells-0.4421830.00e+00

GSE199333

patientsBone marrow aspirateAcute myeloid leukemiaPrimary FLT3-ITD-mutated acute myeloid leukemia (AML)Targeted therapygilteritinibpreMalignant cells-0.265510.00e+00

GSE199333

patientsBone marrow aspirateAcute myeloid leukemiaPrimary FLT3-ITD-mutated acute myeloid leukemia (AML)Targeted therapygilteritinibpreB cells-0.981811.25e-05

GSE131984_JQ1Pac

SUM159 cell lineCell lineBreast cancerTriple-negative breast cancer (TNBC)Targeted therapyJQ1 + paclitaxelNAMalignant cells0.2805363.76e-16

GSE108397

451Lu cell lineCell lineMelanomaMelanomaTargeted therapyPLX-4720NAMalignant cells-0.305580.00e+00

GSE161801_IMiD

patientsBone marrow aspirateMultiple myelomaRefractory multiple myeloma (MM)Targeted therapypomalidomide + dexamethasone OR lenalidomide + dexamethasonepreMalignant cells-0.2672550.00e+00

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Expression of PCBP2 in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to PCBP2

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.

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MicroRNAs (miRNA) regulating PCBP2

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
PCBP2hsa-miR-190a-3p99.9964NM_001098620
PCBP2hsa-miR-5011-5p99.981NM_001098620
PCBP2hsa-miR-6807-5p97.5056NM_001098620
PCBP2hsa-miR-548as-3p93.6703NM_001098620
PCBP2hsa-miR-477593.4227NM_031989
PCBP2hsa-miR-4738-3p92.9648NM_031989
PCBP2hsa-miR-5681a92.2696NM_031989
PCBP2hsa-miR-449991.9506NM_001098620
PCBP2hsa-miR-378a-5p89.5716NM_031989
PCBP2hsa-miR-42188.0259NM_031989
PCBP2hsa-miR-548aa87.2916NM_001098620
PCBP2hsa-miR-548t-3p87.2916NM_001098620
PCBP2hsa-miR-548ap-3p87.2916NM_001098620
PCBP2hsa-miR-4482-3p86.6791NM_001098620
PCBP2hsa-miR-6777-3p85.7657NM_031989
PCBP2hsa-miR-316385.4827NM_001098620
PCBP2hsa-miR-5582-3p85.313NM_001098620
PCBP2hsa-miR-548ar-3p85.313NM_001098620
PCBP2hsa-miR-539-5p84.8831NM_031989
PCBP2hsa-miR-520d-5p84.8778NM_001098620
PCBP2hsa-miR-524-5p84.8778NM_001098620
PCBP2hsa-miR-129382.7627NM_031989
PCBP2hsa-miR-3691-5p82.5932NM_031989
PCBP2hsa-miR-313482.5252NM_001098620
PCBP2hsa-miR-548ay-3p82.3731NM_001098620
PCBP2hsa-miR-548at-3p82.3731NM_001098620
PCBP2hsa-miR-3613-3p82.1656NM_031989
PCBP2hsa-miR-448381.9557NM_031989
PCBP2hsa-miR-548c-3p81.7098NM_001098620
PCBP2hsa-miR-6744-5p81.1286NM_031989
PCBP2hsa-miR-391981.0848NM_031989
PCBP2hsa-miR-548f-3p81.0507NM_001098620
PCBP2hsa-miR-548a-3p81.0507NM_001098620
PCBP2hsa-miR-548az-3p81.0507NM_001098620
PCBP2hsa-miR-548bc81.0507NM_001098620
PCBP2hsa-miR-548e-3p81.0507NM_001098620
PCBP2hsa-miR-6825-3p80.6484NM_031989
PCBP2hsa-miR-509380.1761NM_031989
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Motifs and transcription factors (TFs) regulating PCBP2

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
PCBP2metacluster_7.13ZFX (directAnnotation).
PCBP2metacluster_170.2KLF1; KLF10; KLF10; KLF11; KLF11; KLF11; KLF12; KLF12; KLF14; KLF15; KLF17; KLF2; KLF5; KLF7; KLF7; KLF8; MAZ; MAZ; PATZ1; SP1; SP1; SP1; SP2; SP2; SP2; SP2; SP2; SP2; SP2; SP2; SP4; SP4; SP5; SP6; SP7; SP8; SP9; ZNF281 (directAnnotation). E2F1; E2F4; KLF10; KLF13; KLF14; KLF17; KLF2; KLF7; SP1; SP1; SP3; SP4; SP5; SP6; SP7 (inferredBy_Orthology).
PCBP2metacluster_155.23BCL11B; ZNF711; ZNF711 (directAnnotation). ZFY (inferredBy_Orthology).
PCBP2jaspar__MA0079.5SP1 (directAnnotation).
PCBP2kznf__ZNF282_Imbeault2017_OM_RCADEZNF282 (directAnnotation).
PCBP2metacluster_112.5HOXA4; PAX3; PAX7; PAX7 (directAnnotation).
PCBP2jaspar__MA0748.2YY2 (directAnnotation).
PCBP2jaspar__MA1460.1YY1 (inferredBy_Orthology).
PCBP2transfac_pro__M00652NRF1 (directAnnotation).
PCBP2metacluster_55.3E2F6; EGR1; NRF1; NRF1; NRF1; NRF1; NRF1; NRF1; NRF1; NRF1; NRF1; NRF1; ZBTB2; ZSCAN10 (directAnnotation). NFE2L1; NRF1; NRF1; NRF1 (inferredBy_Orthology).
PCBP2metacluster_33.8BRCA1; CHD2; CHD2; ETS1; NR3C1; ZBED1; ZBED1; ZBED1; ZBTB33; ZBTB33; ZBTB33; ZBTB33; ZBTB33; ZBTB33; ZBTB33 (directAnnotation). CHD2; ZBTB33 (inferredBy_Orthology).
PCBP2hdpi__TIMELESSTIMELESS (directAnnotation).
PCBP2transfac_pro__M05893ZNF676 (directAnnotation).
PCBP2taipale_tf_pairs__E2F1_EOMES_RGGTGTNNNGGCGSNNTNNCRSNN_CAPE2F1; EOMES (directAnnotation).
PCBP2metacluster_44.18NKX3-2 (directAnnotation).
PCBP2metacluster_44.21NKX3-2 (directAnnotation).
PCBP2metacluster_44.13NKX3-1; NKX3-2 (directAnnotation).
PCBP2tfdimers__MD00187GATA1; GATA2; GATA3; GATA4; GATA5; GATA6 (directAnnotation).
PCBP2transfac_pro__M06292ZNF766 (directAnnotation).
PCBP2metacluster_44.19NKX3-1 (inferredBy_Orthology).
PCBP2metacluster_44.16NKX3-1 (directAnnotation).
PCBP2swissregulon__mm__Sox5SOX5 (inferredBy_Orthology).
PCBP2tfdimers__MD00084ARID3A; NKX2-4 (directAnnotation).
PCBP2metacluster_190.3IKZF2; IKZF2; ILF2; NFATC1; NFATC2; NFATC3; NFATC4 (directAnnotation). NFATC2 (inferredBy_Orthology).
PCBP2hocomoco__GMEB2_HUMAN.H11MO.0.DGMEB2 (directAnnotation).
PCBP2hdpi__POU4F3POU4F3 (directAnnotation).
PCBP2cisbp__M11350STAT1 (directAnnotation).
PCBP2transfac_pro__M07607NFATC3 (directAnnotation).
PCBP2tfdimers__MD00548CEBPA; CEBPB; CEBPD; CEBPE; CEBPG; MYCN (directAnnotation).
PCBP2transfac_pro__M06137ZNF250 (directAnnotation).
PCBP2transfac_pro__M06119ZNF254 (directAnnotation).
PCBP2transfac_pro__M04844MAX (directAnnotation).
PCBP2metacluster_44.25ISL2 (directAnnotation).
PCBP2transfac_pro__M05976ZNF223 (directAnnotation).
PCBP2tfdimers__MD00335FOXP3; NKX2-1 (directAnnotation).
PCBP2taipale_tf_pairs__CEBPG_CREB3L1_NGCCACGCAAYN_CAP_reprCEBPG; CREB3L1 (directAnnotation).
PCBP2transfac_pro__M06919ZNF652 (directAnnotation).
PCBP2transfac_pro__M06270ZNF468 (directAnnotation).
PCBP2kznf__CTCF_Rhee2011.2_ChIP-exoCTCF (directAnnotation).
PCBP2hdpi__MAGED4MAGED4 (directAnnotation).
PCBP2transfac_pro__M06877ZNF224 (directAnnotation).
PCBP2hdpi__TSNAXTSNAX (directAnnotation).
PCBP2cisbp__M00788ZFY (inferredBy_Orthology).
PCBP2taipale_cyt_meth__ZNF460_NRMCGCCCCCCGN_eDBD_methZNF460 (directAnnotation).
PCBP2transfac_pro__M01219SP1 (directAnnotation). SP3 (inferredBy_Orthology).
PCBP2transfac_pro__M02898SMAD3 (directAnnotation).
PCBP2taipale_tf_pairs__TFAP2C_E2F8_NNTCCCGCNNNCCNNNGGC_CAP_reprE2F8; TFAP2C (directAnnotation).
PCBP2cisbp__M00249WT1 (directAnnotation).
PCBP2metacluster_66.4ARNT2; NR0B1; NR0B1; ZSCAN5A; ZSCAN5A (directAnnotation). ARNT2 (inferredBy_Orthology).
PCBP2metacluster_144.8ZNF30; ZNF30 (directAnnotation).
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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.

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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.



1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."