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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene (This gene does not contain this module)

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor (This gene does not contain this module)

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Acts as a drug target< (This gene does not contain this module)

Gene: PACS1

Summary for PACS1

Gene informationGene symbol

PACS1

Ensembl ID

ENSG00000175115

Entrez ID

55690

Gene namephosphofurin acidic cluster sorting protein 1
SynonymsFLJ10209|KIAA1175
Gene typeprotein_coding
UniProtAcc

Q6VY07


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Dataset with differentially expressed gene: PACS1

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE139386

H3122 cell lineCell lineLung cancerEML4-ALK fusion-positive non-small cell lung cancer (NSCLC)Targeted therapyceritinibNAMalignant cells-0.428540.00e+00

GSE131984_JQ1Pal

SUM159 cell lineCell lineBreast cancerTriple-negative breast cancer (TNBC)Targeted therapyJQ1 + palbociclibNAMalignant cells0.2683413.07e-18

GSE108397

451Lu cell lineCell lineMelanomaMelanomaTargeted therapyPLX-4720NAMalignant cells-0.3001370.00e+00

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Expression of PACS1 in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to PACS1

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.

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MicroRNAs (miRNA) regulating PACS1

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
PACS1hsa-miR-449299.6267NM_018026
PACS1hsa-miR-6797-5p99.3094NM_018026
PACS1hsa-miR-450599.1151NM_018026
PACS1hsa-miR-449899.0202NM_018026
PACS1hsa-miR-578798.932NM_018026
PACS1hsa-miR-1249-5p98.8593NM_018026
PACS1hsa-miR-76298.7893NM_018026
PACS1hsa-miR-5001-5p98.659NM_018026
PACS1hsa-miR-5196-5p98.6376NM_018026
PACS1hsa-miR-4747-5p98.1255NM_018026
PACS1hsa-miR-449a97.6564NM_018026
PACS1hsa-miR-34a-5p97.6564NM_018026
PACS1hsa-miR-4728-5p97.6234NM_018026
PACS1hsa-miR-6785-5p97.5495NM_018026
PACS1hsa-miR-477996.6032NM_018026
PACS1hsa-miR-612795.8289NM_018026
PACS1hsa-miR-449b-5p95.7665NM_018026
PACS1hsa-miR-34c-5p95.7665NM_018026
PACS1hsa-miR-149-3p95.6844NM_018026
PACS1hsa-miR-6883-5p95.6844NM_018026
PACS1hsa-miR-613394.0477NM_018026
PACS1hsa-miR-613094.0477NM_018026
PACS1hsa-miR-612994.0477NM_018026
PACS1hsa-miR-451094.0477NM_018026
PACS1hsa-miR-6799-5p91.6064NM_018026
PACS1hsa-miR-3184-5p91.498NM_018026
PACS1hsa-miR-4731-5p89.7518NM_018026
PACS1hsa-miR-1910-3p89.5035NM_018026
PACS1hsa-miR-5006-5p89.1882NM_018026
PACS1hsa-miR-597-5p89.0268NM_018026
PACS1hsa-miR-6511a-5p88.2001NM_018026
PACS1hsa-miR-569888.0229NM_018026
PACS1hsa-miR-4723-5p88.0229NM_018026
PACS1hsa-miR-7111-5p88.0229NM_018026
PACS1hsa-miR-6870-5p88.0229NM_018026
PACS1hsa-miR-3135b87.3743NM_018026
PACS1hsa-miR-182786.3163NM_018026
PACS1hsa-miR-7106-5p86.0921NM_018026
PACS1hsa-miR-471085.7133NM_018026
PACS1hsa-miR-6780a-5p85.1441NM_018026
PACS1hsa-miR-423-5p84.763NM_018026
PACS1hsa-miR-6779-5p84.3437NM_018026
PACS1hsa-miR-30b-3p84.3437NM_018026
PACS1hsa-miR-1273h-5p84.3437NM_018026
PACS1hsa-miR-3689c84.3437NM_018026
PACS1hsa-miR-3689a-3p84.3437NM_018026
PACS1hsa-miR-3689b-3p84.3437NM_018026
PACS1hsa-miR-6889-3p83.7138NM_018026
PACS1hsa-miR-6737-3p82.2958NM_018026
PACS1hsa-miR-7157-3p82.2958NM_018026
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Motifs and transcription factors (TFs) regulating PACS1

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
PACS1metacluster_7.13ZFX (directAnnotation).
PACS1cisbp__M01863ZNF711 (inferredBy_Orthology).
PACS1metacluster_151.2ZNF23 (directAnnotation).
PACS1metacluster_170.2KLF1; KLF10; KLF10; KLF11; KLF11; KLF11; KLF12; KLF12; KLF14; KLF15; KLF17; KLF2; KLF5; KLF7; KLF7; KLF8; MAZ; MAZ; PATZ1; SP1; SP1; SP1; SP2; SP2; SP2; SP2; SP2; SP2; SP2; SP2; SP4; SP4; SP5; SP6; SP7; SP8; SP9; ZNF281 (directAnnotation). E2F1; E2F4; KLF10; KLF13; KLF14; KLF17; KLF2; KLF7; SP1; SP1; SP3; SP4; SP5; SP6; SP7 (inferredBy_Orthology).
PACS1transfac_pro__M05479ZNF580 (directAnnotation).
PACS1metacluster_155.23BCL11B; ZNF711; ZNF711 (directAnnotation). ZFY (inferredBy_Orthology).
PACS1kznf__ZNF783_Imbeault2017_OM_MEMEZNF783 (directAnnotation).
PACS1transfac_pro__M06071ZNF814 (directAnnotation).
PACS1metacluster_135.10MBD2; MBD2; MECP2; MECP2 (directAnnotation).
PACS1jaspar__MA0079.5SP1 (directAnnotation).
PACS1dbtfbs__E2F8_representative_N1E2F8 (directAnnotation).
PACS1metacluster_15.3E2F1; E2F6; E2F8; E2F8; TFDP1 (directAnnotation). E2F3 (inferredBy_Orthology).
PACS1taipale_cyt_meth__E2F2_GCGCGCGCGYW_eDBD_reprE2F2 (directAnnotation).
PACS1jaspar__MA1122.1TFDP1 (directAnnotation).
PACS1metacluster_34.1ZNF143; ZNF143; ZNF143; ZNF76; ZNF76; ZNF76 (directAnnotation).
PACS1kznf__KLF1_Barrera2016.2_PBMKLF1 (directAnnotation).
PACS1transfac_pro__M01253CNOT3 (directAnnotation).
PACS1transfac_pro__M04817ZBTB33 (directAnnotation).
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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.

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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.



1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."