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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene (This gene does not contain this module)

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor (This gene does not contain this module)

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Acts as a drug target

Gene: NR1H3

Summary for NR1H3

Gene informationGene symbol

NR1H3

Ensembl ID

ENSG00000025434

Entrez ID

10062

Gene namenuclear receptor subfamily 1 group H member 3
SynonymsLXR-a|LXRa|RLD-1
Gene typeprotein_coding
UniProtAcc

NA


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Dataset with differentially expressed gene: NR1H3

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE169246_PacTissue

patientsTumor tissueBreast cancerAdvanced triple-negative breast cancer (TNBC)ChemotherapypaclitaxelpreMono/Macro0.4105656.49e-39

GSE169246_PacAteTissue

patientsTumor tissueBreast cancerAdvanced triple-negative breast cancer (TNBC)Immunotherapyatezolizumab + paclitaxelpreMono/Macro-0.8080020.00e+00

GSE207422_Tor

patientsTumor tissueLung cancerEGFR/ALK mutation negative non-small cell lung cancer (NSCLC)Immunotherapytoripalimab + carboplatin + (docetaxel or pemetrexed or emcitabine)postMono/Macro-0.412592.88e-06

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Expression of NR1H3 in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to NR1H3

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.

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MicroRNAs (miRNA) regulating NR1H3

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
NR1H3hsa-miR-4668-5p85.7566NM_001130101
NR1H3hsa-miR-6886-3p85.2054NM_001130101
NR1H3hsa-miR-6840-3p81.9559NM_001130101
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Motifs and transcription factors (TFs) regulating NR1H3

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
NR1H3metacluster_167.7IRF8 (inferredBy_Orthology).
NR1H3transfac_pro__M05605GATA6 (inferredBy_Orthology).
NR1H3transfac_pro__M05612ZNF189 (directAnnotation).
NR1H3transfac_pro__M05418ZNF521 (directAnnotation).
NR1H3kznf__ZNF584_Imbeault2017_OM_RCADEZNF584 (directAnnotation).
NR1H3transfac_pro__M06839ZNF263 (inferredBy_Orthology).
NR1H3tfdimers__MD00095ELF1; NEUROD1 (directAnnotation).
NR1H3metacluster_31.7FOXO1; FOXO3; FOXO6 (directAnnotation).
NR1H3taipale_tf_pairs__HOXB13_TBX21_ARGTGNNNNNNATAAA_CAP_reprHOXB13; TBX21 (directAnnotation).
NR1H3metacluster_12.1ZNF3 (directAnnotation).
NR1H3tfdimers__MD00395NKX2-1; OTX1; OTX2 (directAnnotation).
NR1H3transfac_pro__M06398ZNF761 (directAnnotation).
NR1H3transfac_pro__M06013ZFP69B (directAnnotation).
NR1H3transfac_pro__M06911ZNF233 (inferredBy_Orthology).
NR1H3transfac_pro__M06017ZNF586 (directAnnotation).
NR1H3transfac_pro__M06153ZNF83 (directAnnotation).
NR1H3tfdimers__MD00295EBF1; STAT6 (directAnnotation).
NR1H3tfdimers__MD00433NKX3-2; ZNF217 (directAnnotation).
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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.

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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.
Target nameDrug nameDrug IDDrug type
NR1H3"(2E,4E)-11-METHOXY-3,7,11-TRIMETHYLDODECA-2,4-DIENOIC ACID"

DB08175

small molecule
NR1H3"1-BENZYL-3-(4-METHOXYPHENYLAMINO)-4-PHENYLPYRROLE-2,5-DIONE"

DB08063

small molecule
NR1H3"Diacerein"

DB11994

small molecule
NR1H3"N-(TERT-BUTYL)-3,5-DIMETHYL-N'-[(5-METHYL-2,3-DIHYDRO-1,4-BENZODIOXIN-6-YL)CARBONYL]BENZOHYDRAZIDE"

DB07929

small molecule
NR1H3"Rhein"

DB13174

small molecule
NR1H3"TO-901317"

DB07080

small molecule
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1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."