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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene (This gene does not contain this module)

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor (This gene does not contain this module)

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Acts as a drug target< (This gene does not contain this module)

Gene: NEDD4

Summary for NEDD4

Gene informationGene symbol

NEDD4

Ensembl ID

ENSG00000069869

Entrez ID

4734

Gene nameNEDD4 E3 ubiquitin protein ligase
SynonymsKIAA0093|MGC176705|NEDD4-1|RPF1
Gene typeprotein_coding
UniProtAcc

NA


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Dataset with differentially expressed gene: NEDD4

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE186960

Panc1 cell lineCell linePancreatic cancerPancreatic ductal adenocarcinoma (PDAC)ChemotherapygemcitabineNAMalignant cells0.265616.30e-16

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Expression of NEDD4 in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to NEDD4

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.

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MicroRNAs (miRNA) regulating NEDD4

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
NEDD4hsa-miR-5011-5p99.7692NM_001284338
NEDD4hsa-miR-30a-5p98.1227NM_001284338
NEDD4hsa-miR-30b-5p98.1227NM_001284338
NEDD4hsa-miR-30e-5p98.1227NM_001284338
NEDD4hsa-miR-30d-5p98.1227NM_001284338
NEDD4hsa-miR-30c-5p98.1227NM_001284338
NEDD4hsa-miR-190a-3p98.107NM_001284338
NEDD4hsa-miR-360997.5449NM_001284338
NEDD4hsa-miR-548ah-5p96.898NM_001284338
NEDD4hsa-miR-548t-5p96.012NM_001284338
NEDD4hsa-miR-548az-5p96.012NM_001284338
NEDD4hsa-miR-520e-5p95.8808NM_001284338
NEDD4hsa-miR-806295.6443NM_001284338
NEDD4hsa-miR-471994.4874NM_001284338
NEDD4hsa-miR-4735-3p94.3533NM_001284338
NEDD4hsa-miR-18a-5p93.9855NM_001284338
NEDD4hsa-miR-18b-5p93.9855NM_001284338
NEDD4hsa-miR-431093.9055NM_001284338
NEDD4hsa-miR-487b-5p93.7111NM_001284338
NEDD4hsa-miR-487a-5p93.7111NM_001284338
NEDD4hsa-miR-7157-5p93.6693NM_001284338
NEDD4hsa-miR-655-3p92.4919NM_001284338
NEDD4hsa-miR-374c-5p91.2565NM_001284338
NEDD4hsa-miR-128391.1017NM_001284338
NEDD4hsa-miR-2115-3p90.9888NM_001284338
NEDD4hsa-miR-1298-3p90.1139NM_001284338
NEDD4hsa-miR-6763-3p89.7588NM_001284338
NEDD4hsa-miR-3129-5p88.5057NM_001284338
NEDD4hsa-miR-199a-3p88.5057NM_001284338
NEDD4hsa-miR-199b-3p88.5057NM_001284338
NEDD4hsa-miR-124487.2194NM_001284338
NEDD4hsa-miR-469886.9695NM_001284338
NEDD4hsa-miR-9-5p85.511NM_001284338
NEDD4hsa-miR-397785.3828NM_001284338
NEDD4hsa-miR-7853-5p84.8627NM_001284338
NEDD4hsa-miR-105-5p84.8627NM_001284338
NEDD4hsa-miR-6826-5p84.0103NM_001284338
NEDD4hsa-miR-27b-3p83.9176NM_001284338
NEDD4hsa-miR-998583.9176NM_001284338
NEDD4hsa-miR-27a-3p83.9176NM_001284338
NEDD4hsa-miR-4797-3p83.3325NM_001284338
NEDD4hsa-miR-475283.1966NM_001284338
NEDD4hsa-miR-5003-3p81.134NM_001284338
NEDD4hsa-miR-318580.6683NM_001284338
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Motifs and transcription factors (TFs) regulating NEDD4

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
NEDD4metacluster_144.8ZNF30; ZNF30 (directAnnotation).
NEDD4metacluster_144.3ZNF704; ZNF704 (directAnnotation).
NEDD4tfdimers__MD00154MZF1; SREBF1 (directAnnotation).
NEDD4kznf__ZNF730_Imbeault2017_RP_RCADEZNF730 (directAnnotation).
NEDD4transfac_pro__M01219SP1 (directAnnotation). SP3 (inferredBy_Orthology).
NEDD4cisbp__M00249WT1 (directAnnotation).
NEDD4taipale_tf_pairs__GCM1_ELF1_GTGCGGGCGGAAGTN_CAP_reprELF1; GCM1 (directAnnotation).
NEDD4homer__GGCGGGAARN_E2F6E2F6 (directAnnotation).
NEDD4taipale_cyt_meth__ZNF460_NRMCGCCCCCCGN_eDBD_methZNF460 (directAnnotation).
NEDD4kznf__ZNF571_Imbeault2017_OM_RCADEZNF571 (directAnnotation).
Page: 1

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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.

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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.



1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."