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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene (This gene does not contain this module)

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor (This gene does not contain this module)

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Acts as a drug target< (This gene does not contain this module)

Gene: NDEL1

Summary for NDEL1

Gene informationGene symbol

NDEL1

Ensembl ID

ENSG00000166579

Entrez ID

81565

Gene namenudE neurodevelopment protein 1 like 1
SynonymsMITAP1|NDE1L1|NDE2|NUDEL
Gene typeprotein_coding
UniProtAcc

NA


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Dataset with differentially expressed gene: NDEL1

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE140440

DU145 and PC cell linesCell lineProstate cancerProstate cancerChemotherapydocetaxelNAMalignant cells0.9954921.05e-02

PMID34715028

patientsTumor tissueKidney cancerClear cell renal cell carcinoma (ccRCC)ImmunotherapynivolumabpostCD4+ T cells-0.2585918.18e-33

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Expression of NDEL1 in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to NDEL1

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.

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MicroRNAs (miRNA) regulating NDEL1

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
NDEL1hsa-miR-4676-5p97.5425NM_001025579
NDEL1hsa-miR-57597.5425NM_001025579
NDEL1hsa-miR-442795.276NM_001025579
NDEL1hsa-miR-10793.731NM_001025579
NDEL1hsa-miR-103a-3p93.731NM_001025579
NDEL1hsa-miR-4743-3p93.7111NM_001025579
NDEL1hsa-miR-4677-3p93.5162NM_001025579
NDEL1hsa-miR-3692-3p93.1034NM_030808
NDEL1hsa-miR-4680-3p92.8072NM_001025579
NDEL1hsa-miR-4652-3p92.4172NM_001025579
NDEL1hsa-miR-5187-3p91.9954NM_001025579
NDEL1hsa-miR-467991.7961NM_001025579
NDEL1hsa-miR-30c-5p91.1216NM_001025579
NDEL1hsa-miR-30e-5p91.1216NM_001025579
NDEL1hsa-miR-30d-5p91.1216NM_001025579
NDEL1hsa-miR-30b-5p91.1216NM_001025579
NDEL1hsa-miR-30a-5p91.1216NM_001025579
NDEL1hsa-miR-6783-3p89.9037NM_001025579
NDEL1hsa-miR-1343-3p89.9037NM_001025579
NDEL1hsa-miR-6846-5p89.4668NM_030808
NDEL1hsa-miR-6848-5p89.4668NM_030808
NDEL1hsa-miR-5197-3p88.2382NM_001025579
NDEL1hsa-miR-3927-5p86.6951NM_001025579
NDEL1hsa-miR-186-5p85.7546NM_001025579
NDEL1hsa-miR-428584.936NM_030808
NDEL1hsa-miR-6721-5p83.6239NM_030808
NDEL1hsa-miR-378a-5p81.456NM_001025579
NDEL1hsa-miR-20b-5p80.6684NM_030808
NDEL1hsa-miR-106b-5p80.6684NM_030808
NDEL1hsa-miR-20a-5p80.6684NM_030808
NDEL1hsa-miR-17-5p80.6684NM_030808
NDEL1hsa-miR-526b-3p80.6684NM_030808
NDEL1hsa-miR-519d-3p80.6684NM_030808
NDEL1hsa-miR-93-5p80.6684NM_030808
NDEL1hsa-miR-106a-5p80.6684NM_030808
NDEL1hsa-miR-11181-3p80.0111NM_001025579
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Motifs and transcription factors (TFs) regulating NDEL1

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
NDEL1metacluster_3.5KLF14; KLF15; KLF15; KLF16 (directAnnotation).
NDEL1taipale_cyt_meth__E2F2_NCGCGCGCGCM_eDBD_methE2F2 (directAnnotation).
NDEL1transfac_pro__M07387ZBTB7A (directAnnotation).
NDEL1transfac_pro__M07436WT1 (directAnnotation).
NDEL1transfac_pro__M07461KLF1; KLF10; KLF11; KLF12; KLF13; KLF15; KLF16; KLF17; KLF2; KLF3; KLF4; KLF5; KLF6; KLF7; KLF8; KLF9 (directAnnotation).
NDEL1transfac_pro__M00716ZBTB14 (directAnnotation).
NDEL1swissregulon__hs__CHD1CHD1 (directAnnotation).
NDEL1hdpi__HIP2UBE2K (directAnnotation).
NDEL1metacluster_170.2KLF1; KLF10; KLF10; KLF11; KLF11; KLF11; KLF12; KLF12; KLF14; KLF15; KLF17; KLF2; KLF5; KLF7; KLF7; KLF8; MAZ; MAZ; PATZ1; SP1; SP1; SP1; SP2; SP2; SP2; SP2; SP2; SP2; SP2; SP2; SP4; SP4; SP5; SP6; SP7; SP8; SP9; ZNF281 (directAnnotation). E2F1; E2F4; KLF10; KLF13; KLF14; KLF17; KLF2; KLF7; SP1; SP1; SP3; SP4; SP5; SP6; SP7 (inferredBy_Orthology).
NDEL1transfac_pro__M04893TAF1 (directAnnotation).
NDEL1transfac_pro__M03876ZBTB33 (directAnnotation).
NDEL1metacluster_133.1ZNF304; ZNF304; ZSCAN22 (directAnnotation).
NDEL1kznf__ZNF441_Imbeault2017_RP_RCADEZNF441 (directAnnotation).
NDEL1transfac_pro__M01219SP1 (directAnnotation). SP3 (inferredBy_Orthology).
NDEL1metacluster_3.7SP1; SP1; SP1; SP1; SP1; SP1; SP1; SP1; SP2; SP2; SP2; SP2; SP3; SP3; SP3; SP4; SP4; SP4; SP4; SP4; SP4; SP5 (directAnnotation).
NDEL1jaspar__MA0604.1ATF1 (inferredBy_Orthology).
NDEL1taipale_cyt_meth__CREB1_NRTGACGTN_eDBD_reprCREB1 (directAnnotation).
NDEL1transfac_pro__M01861ATF1 (directAnnotation).
NDEL1metacluster_111.3ATF1; ATF3; CREB1; CREB1; CREB1; CREB1; CREB1; CREM; CREM; CREM; CREM; E4F1; E4F1 (directAnnotation). CREB1; CREB1; CREM; JDP2 (inferredBy_Orthology).
NDEL1dbtfbs__GMEB1_K562_ENCSR928KOR_merged_N1GMEB1 (directAnnotation).
NDEL1transfac_pro__M00801ATF1; ATF2; ATF3; ATF4; ATF7; CREB1; CREM (directAnnotation). ATF7-NPFF (inferredBy_Orthology).
NDEL1hocomoco__GMEB2_HUMAN.H11MO.0.DGMEB2 (directAnnotation).
NDEL1transfac_public__M00039CREB1 (directAnnotation).
NDEL1transfac_public__M00040ATF2 (directAnnotation).
NDEL1transfac_pro__M08803CREM (directAnnotation).
NDEL1taipale_cyt_meth__JUND_NRTGACGCATN_eDBD_reprJUND (directAnnotation).
NDEL1swissregulon__hs__GMEB2GMEB2 (directAnnotation).
NDEL1metacluster_131.7EGR1; EGR1; EGR1; EGR1; EGR1; EGR1; EGR1; EGR1; EGR1; EGR1; EGR1; EGR1; EGR1; EGR1; EGR1; EGR1; EGR1; EGR2; EGR2; EGR2; EGR2; EGR2; EGR2; EGR3; EGR3; EGR3; EGR3; EGR3; EGR3; EGR4; EGR4; WT1 (directAnnotation). EGR1; EGR1; EGR1; EGR1; EGR1; EGR2; EGR2; EGR2; EGR2; EGR2; EGR3; EGR3; WT1; ZBTB43; ZBTB43; ZBTB43; ZBTB43; ZBTB5; ZBTB5; ZBTB5; ZBTB5; ZBTB7A; ZBTB7A; ZBTB7A; ZBTB7A; ZNF367; ZNF367; ZNF367; ZNF367; ZNF740; ZNF740; ZNF740; ZNF740 (inferredBy_Orthology).
NDEL1transfac_pro__M02089E2F3 (directAnnotation).
NDEL1hdpi__NRLNRL (directAnnotation).
NDEL1metacluster_3.11SP1; SP1; SP2; SP3; SP3; SP4 (directAnnotation).
NDEL1transfac_pro__M04817ZBTB33 (directAnnotation).
NDEL1transfac_pro__M00803E2F1; E2F3; E2F4; TFDP1 (directAnnotation).
NDEL1transfac_pro__M01199TRIM28 (directAnnotation).
NDEL1metacluster_67.2ZNF501 (directAnnotation). ACAA1; E2F2; E2F2; E2F3; E2F3; FOXN4 (inferredBy_Orthology).
NDEL1transfac_pro__M07329SP7 (directAnnotation).
NDEL1flyfactorsurvey__Mad_FlyReg_FBgn0011648SMAD9 (inferredBy_Orthology).
NDEL1cisbp__M07938E2F1 (directAnnotation).
NDEL1metacluster_111.6GMEB1; GMEB2 (directAnnotation).
NDEL1transfac_pro__M01253CNOT3 (directAnnotation).
NDEL1transfac_pro__M07310SP5 (directAnnotation).
NDEL1metacluster_151.1KAT7; PML; SMAD5; TAF1; ZFP37; ZGPAT; ZNF519; ZNF519; ZNF571; ZNF770; ZNF770; ZNF770; ZSCAN22; ZSCAN22 (directAnnotation).
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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.

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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.



1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."