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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene (This gene does not contain this module)

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor (This gene does not contain this module)

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Acts as a drug target< (This gene does not contain this module)

Gene: NALCN

Summary for NALCN

Gene informationGene symbol

NALCN

Ensembl ID

ENSG00000102452

Entrez ID

259232

Gene namesodium leak channel, non-selective
SynonymsbA430M15.1|CanIon|VGCNL1
Gene typeprotein_coding
UniProtAcc

Q8IZF0


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Dataset with differentially expressed gene: NALCN

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE139386

H3122 cell lineCell lineLung cancerEML4-ALK fusion-positive non-small cell lung cancer (NSCLC)Targeted therapyceritinibNAMalignant cells-0.4217550.00e+00

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Expression of NALCN in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to NALCN

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.

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MicroRNAs (miRNA) regulating NALCN

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
NALCNhsa-miR-55595.7713NM_052867
NALCNhsa-miR-3121-3p95.0279NM_052867
NALCNhsa-miR-58193.9535NM_052867
NALCNhsa-miR-1288-5p90.8026NM_052867
NALCNhsa-miR-58788.0747NM_052867
NALCNhsa-miR-20b-3p87.6238NM_052867
NALCNhsa-miR-551b-5p87.5326NM_052867
NALCNhsa-miR-2276-5p87.4883NM_052867
NALCNhsa-miR-390886.9588NM_052867
NALCNhsa-let-7c-3p86.934NM_052867
NALCNhsa-miR-15b-3p86.7624NM_052867
NALCNhsa-miR-153-5p86.658NM_052867
NALCNhsa-miR-5692a86.367NM_052867
NALCNhsa-miR-805585.5304NM_052867
NALCNhsa-miR-1211984.9658NM_052867
NALCNhsa-miR-10523-5p84.8854NM_052867
NALCNhsa-miR-651-3p84.8636NM_052867
NALCNhsa-miR-6739-5p84.5897NM_052867
NALCNhsa-miR-6733-5p84.5897NM_052867
NALCNhsa-miR-576-5p84.1412NM_052867
NALCNhsa-miR-3942-3p83.9879NM_052867
NALCNhsa-miR-314883.554NM_052867
NALCNhsa-miR-58883.0738NM_052867
NALCNhsa-miR-4701-5p83.0738NM_052867
NALCNhsa-miR-4786-3p82.732NM_052867
NALCNhsa-miR-510081.5808NM_052867
NALCNhsa-miR-397681.0256NM_052867
NALCNhsa-miR-315380.7214NM_052867
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Motifs and transcription factors (TFs) regulating NALCN

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
NALCNmetacluster_191.2ELK4; NR2C2; NR2C2; NR2C2; NR2C2 (directAnnotation). GABPA (inferredBy_Orthology).
NALCNmetacluster_55.3E2F6; EGR1; NRF1; NRF1; NRF1; NRF1; NRF1; NRF1; NRF1; NRF1; NRF1; NRF1; ZBTB2; ZSCAN10 (directAnnotation). NFE2L1; NRF1; NRF1; NRF1 (inferredBy_Orthology).
NALCNmetacluster_15.3E2F1; E2F6; E2F8; E2F8; TFDP1 (directAnnotation). E2F3 (inferredBy_Orthology).
NALCNtransfac_pro__M04826EP300 (directAnnotation).
NALCNtaipale_cyt_meth__E2F2_GCGCGCGCGYW_eDBD_reprE2F2 (directAnnotation).
NALCNtransfac_pro__M00652NRF1 (directAnnotation).
NALCNtaipale_tf_pairs__E2F1_HES7_RRCRCGYGYNNNNSGCGCSN_CAP_reprE2F1; HES7 (directAnnotation).
NALCNtransfac_pro__M04866HDAC2 (directAnnotation).
NALCNjaspar__MA1122.1TFDP1 (directAnnotation).
NALCNswissregulon__hs__ZBTB14ZBTB14 (directAnnotation).
NALCNtaipale_tf_pairs__TFAP2C_MAX_TNSCCNNNGGSNNNCACGTGN_CAP_reprMAX; TFAP2C (directAnnotation).
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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.

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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.



1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."