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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene (This gene does not contain this module)

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor (This gene does not contain this module)

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Acts as a drug target< (This gene does not contain this module)

Gene: MSRB3

Summary for MSRB3

Gene informationGene symbol

MSRB3

Ensembl ID

ENSG00000174099

Entrez ID

253827

Gene namemethionine sulfoxide reductase B3
SynonymsDFNB74|DKFZp686C1178|FLJ36866
Gene typeprotein_coding
UniProtAcc

Q8IXL7


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Dataset with differentially expressed gene: MSRB3

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE186960

Panc1 cell lineCell linePancreatic cancerPancreatic ductal adenocarcinoma (PDAC)ChemotherapygemcitabineNAMalignant cells-0.3189281.60e-10

GSE199333

patientsBone marrow aspirateAcute myeloid leukemiaPrimary FLT3-ITD-mutated acute myeloid leukemia (AML)Targeted therapygilteritinibpostMalignant cells0.4367220.00e+00

GSE131984_JQ1

SUM159 cell lineCell lineBreast cancerTriple-negative breast cancer (TNBC)Targeted therapyJQ1NAMalignant cells-0.2763139.38e-21

GSE131984_JQ1Pal

SUM159 cell lineCell lineBreast cancerTriple-negative breast cancer (TNBC)Targeted therapyJQ1 + palbociclibNAMalignant cells-0.3286285.86e-21

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Expression of MSRB3 in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to MSRB3

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.

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MicroRNAs (miRNA) regulating MSRB3

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
MSRB3hsa-miR-130598.5858NM_001031679
MSRB3hsa-miR-335-3p98.4664NM_001031679
MSRB3hsa-miR-612897.7836NM_001031679
MSRB3hsa-miR-340-5p96.3197NM_001031679
MSRB3hsa-miR-450394.7999NM_001031679
MSRB3hsa-miR-3680-3p94.5798NM_001031679
MSRB3hsa-miR-548av-3p94.4638NM_001031679
MSRB3hsa-miR-6728-3p94.3648NM_001031679
MSRB3hsa-miR-612494.1042NM_001031679
MSRB3hsa-miR-93893.9966NM_001031679
MSRB3hsa-miR-874-3p93.666NM_001031679
MSRB3hsa-miR-524-5p93.539NM_001031679
MSRB3hsa-miR-520d-5p93.539NM_001031679
MSRB3hsa-miR-316393.2096NM_001031679
MSRB3hsa-miR-4795-3p93.0271NM_001031679
MSRB3hsa-miR-314892.5763NM_001031679
MSRB3hsa-miR-312891.5755NM_001031679
MSRB3hsa-miR-60791.5511NM_001031679
MSRB3hsa-miR-797691.4758NM_001031679
MSRB3hsa-miR-153-5p91.3863NM_001031679
MSRB3hsa-miR-504-3p90.1511NM_001031679
MSRB3hsa-miR-550a-3p89.9702NM_001031679
MSRB3hsa-miR-548aj-5p89.9011NM_001031679
MSRB3hsa-miR-548x-5p89.9011NM_001031679
MSRB3hsa-miR-548f-5p89.9011NM_001031679
MSRB3hsa-miR-548g-5p89.9011NM_001031679
MSRB3hsa-miR-196a-3p89.5668NM_001031679
MSRB3hsa-miR-200c-5p89.0841NM_001031679
MSRB3hsa-miR-57888.828NM_001031679
MSRB3hsa-miR-497-3p88.7762NM_001031679
MSRB3hsa-miR-302c-5p88.4519NM_001031679
MSRB3hsa-miR-33b-5p88.1951NM_001031679
MSRB3hsa-miR-33a-5p88.1951NM_001031679
MSRB3hsa-miR-58787.9011NM_001031679
MSRB3hsa-miR-137-3p87.4695NM_001031679
MSRB3hsa-miR-129987.446NM_001031679
MSRB3hsa-miR-64386.5144NM_001031679
MSRB3hsa-miR-431986.4716NM_001031679
MSRB3hsa-miR-3173-5p86.2714NM_001031679
MSRB3hsa-miR-18a-3p86.2344NM_001031679
MSRB3hsa-miR-4666a-3p86.0531NM_001031679
MSRB3hsa-miR-10527-5p85.7097NM_001031679
MSRB3hsa-miR-6799-3p84.6167NM_001031679
MSRB3hsa-miR-875-3p84.0086NM_001031679
MSRB3hsa-miR-19a-5p83.4034NM_001031679
MSRB3hsa-miR-19b-1-5p83.4034NM_001031679
MSRB3hsa-miR-19b-2-5p83.4034NM_001031679
MSRB3hsa-miR-5582-5p83.1725NM_001031679
MSRB3hsa-miR-205282.9946NM_001031679
MSRB3hsa-miR-125b-5p81.8862NM_001031679
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Motifs and transcription factors (TFs) regulating MSRB3

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
MSRB3metacluster_191.2ELK4; NR2C2; NR2C2; NR2C2; NR2C2 (directAnnotation). GABPA (inferredBy_Orthology).
MSRB3hdpi__TP73TP73 (directAnnotation).
MSRB3jaspar__MA1483.2ELF2 (directAnnotation).
MSRB3metacluster_138.2ELF1; ELF2; ELF4; ELK1; ELK1; ELK1; ELK1; ELK3; ELK4; ELK4; ELK4; ELK4; ELK4; ELK4; ELK4; ERF; ERG; ERG; ERG; ERG; ETS1; ETS1; ETS2; ETS2; ETV1; ETV1; ETV1; ETV2; ETV3; ETV4; ETV5; ETV5; FEV; FLI1; FLI1; GABPA; GABPA; KMT2B; SPDEF; SPDEF; SPDEF; ZBTB11; ZNF518A; ZNF580 (directAnnotation). ELF1; ELF2; ELF4; ELK1; ELK1; ELK3; ELK4; ERG; ETS1; ETS2; ETV1; ETV2; ETV3; ETV4; ETV5; FEV; FLI1; FLI1; GABPA; SPDEF; SPDEF (inferredBy_Orthology).
MSRB3transfac_pro__M04826EP300 (directAnnotation).
MSRB3hdpi__ETV4ETV4 (directAnnotation).
MSRB3metacluster_33.8BRCA1; CHD2; CHD2; ETS1; NR3C1; ZBED1; ZBED1; ZBED1; ZBTB33; ZBTB33; ZBTB33; ZBTB33; ZBTB33; ZBTB33; ZBTB33 (directAnnotation). CHD2; ZBTB33 (inferredBy_Orthology).
MSRB3metacluster_141.6MZF1; TAF1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY2; YY2; ZFP42; ZFP42; ZFP42; ZFP42; ZFP42; ZFP42; ZNF597 (directAnnotation). TAF1; TAF1L (inferredBy_Orthology).
MSRB3cisbp__M08198ELF1 (directAnnotation).
MSRB3taipale_tf_pairs__E2F1_ELK1_SGCGCNNNNNCGGAAGN_CAP_reprE2F1; ELK1 (directAnnotation).
MSRB3taipale_tf_pairs__FOXO1_ETV1_RCCGGAWGTKKN_CAPETV1; FOXO1 (directAnnotation).
MSRB3jaspar__MA0748.2YY2 (directAnnotation).
MSRB3transfac_pro__M01298MECP2 (directAnnotation).
MSRB3metacluster_7.5PLAGL1; PLAGL1 (directAnnotation).
MSRB3taipale_tf_pairs__MYBL1_EOMES_RSGTGNNNAACGK_CAP_reprEOMES; MYBL1 (directAnnotation).
MSRB3metacluster_182.10ZFX (directAnnotation).
MSRB3transfac_pro__M00492STAT1 (directAnnotation).
MSRB3taipale_tf_pairs__ETV2_FOXO6_RCCGGATGTTKWN_CAPETV2; FOXO6 (directAnnotation).
MSRB3taipale_tf_pairs__ERF_FOXI1_RSCGGATGTTKWN_CAP_reprERF; FOXI1 (directAnnotation).
MSRB3taipale_tf_pairs__ETV2_FOXI1_RSCGGATGTTKW_CAPETV2; FOXI1 (directAnnotation).
MSRB3taipale_tf_pairs__FOXO1_ETV4_RCCGGAWGTKKN_CAPETV4; FOXO1 (directAnnotation).
MSRB3taipale_tf_pairs__FOXO1_ELK1_RSCGGATGTTRTN_CAPELK1; FOXO1 (directAnnotation).
MSRB3transfac_pro__M04950EGR1 (directAnnotation).
MSRB3transfac_pro__M06032ZNF727 (directAnnotation).
MSRB3transfac_pro__M05706ZNF20 (directAnnotation).
MSRB3taipale_tf_pairs__ETV2_RFX5_NNNTTCCGSNNNNGCAACNN_CAP_reprETV2; RFX5 (directAnnotation).
MSRB3swissregulon__mm__E2f7E2F7 (inferredBy_Orthology).
MSRB3hdpi__ELF2ELF2 (directAnnotation).
MSRB3swissregulon__hs__ELK1ELK1 (directAnnotation).
MSRB3metacluster_183.4ETS1 (inferredBy_Orthology).
MSRB3taipale_tf_pairs__ERF_FOXI1_TGTTKMCGGAWRN_CAP_reprERF; FOXI1 (directAnnotation).
MSRB3metacluster_81.7CREB1 (directAnnotation).
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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.

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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.



1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."