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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor (This gene does not contain this module)

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Acts as a drug target

Gene: MDM2

Summary for MDM2

Gene informationGene symbol

MDM2

Ensembl ID

ENSG00000135679

Entrez ID

4193

Gene nameMDM2 proto-oncogene
SynonymsHDM2|MGC5370
Gene typeprotein_coding
UniProtAcc

Q00987


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Dataset with differentially expressed gene: MDM2

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE186960

Panc1 cell lineCell linePancreatic cancerPancreatic ductal adenocarcinoma (PDAC)ChemotherapygemcitabineNAMalignant cells0.6054770.00e+00

GSE199333

patientsBone marrow aspirateAcute myeloid leukemiaPrimary FLT3-ITD-mutated acute myeloid leukemia (AML)Targeted therapygilteritinibpostMalignant cells-0.4222280.00e+00

GSE175716

PDXTumor tissueLiver cancerAdvanced hepatocellular carcinomaTargeted therapysorafenibNAMalignant cells-0.5130540.00e+00

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Expression of MDM2 in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to MDM2

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.
Gene symbolMechanism

MDM2

Unusual Activation of Pro-survival Pathway
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MicroRNAs (miRNA) regulating MDM2

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
MDM2hsa-miR-3613-3p99.56NM_001145339
MDM2hsa-miR-616-5p98.703NM_001145339
MDM2hsa-miR-373-5p98.703NM_001145339
MDM2hsa-miR-371b-5p98.703NM_001145339
MDM2hsa-miR-365898.5517NM_001145339
MDM2hsa-miR-130598.4625NM_001145339
MDM2hsa-miR-548as-3p97.2511NM_001145339
MDM2hsa-miR-495-3p96.4517NM_001145339
MDM2hsa-miR-568896.4517NM_001145339
MDM2hsa-miR-5692a94.9237NM_001145337
MDM2hsa-miR-551b-5p94.8773NM_001145339
MDM2hsa-miR-6809-3p93.0513NM_001145339
MDM2hsa-miR-7110-3p92.9632NM_001145339
MDM2hsa-miR-4753-3p90.4524NM_001145339
MDM2hsa-miR-548c-3p90.1555NM_001145339
MDM2hsa-miR-472990.15NM_001145337
MDM2hsa-miR-797787.4718NM_001145339
MDM2hsa-miR-6728-3p86.7604NM_001145339
MDM2hsa-miR-379-5p86.4506NM_001145339
MDM2hsa-miR-660-5p86.3429NM_001145339
MDM2hsa-miR-182785.324NM_001145339
MDM2hsa-miR-452884.5802NM_001145339
MDM2hsa-miR-608384.2949NM_001145339
MDM2hsa-miR-469883.5271NM_001145339
MDM2hsa-miR-224-5p82.7479NM_001145339
MDM2hsa-miR-447882.5136NM_001145339
MDM2hsa-miR-3145-5p82.4361NM_001145339
MDM2hsa-miR-6873-3p81.6059NM_001145339
MDM2hsa-miR-5571-5p81.5817NM_001145339
MDM2hsa-miR-3529-5p81.3816NM_001145339
MDM2hsa-miR-190a-3p81.2223NM_001145339
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Motifs and transcription factors (TFs) regulating MDM2

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
MDM2metacluster_135.11NR2C2 (directAnnotation).
MDM2metacluster_144.3ZNF704; ZNF704 (directAnnotation).
MDM2metacluster_7.13ZFX (directAnnotation).
MDM2metacluster_155.23BCL11B; ZNF711; ZNF711 (directAnnotation). ZFY (inferredBy_Orthology).
MDM2jaspar__MA0185.1DEAF1 (inferredBy_Orthology).
MDM2metacluster_61.1DEAF1; DEAF1 (directAnnotation).
MDM2cisbp__M00788ZFY (inferredBy_Orthology).
MDM2hdpi__ZNF304ZNF304 (directAnnotation).
MDM2transfac_pro__M02844BCL6B (inferredBy_Orthology).
MDM2metacluster_125.2TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2D; TFAP2D; TFAP2D; TFAP2E; TFAP2E; TFAP2E; TFAP2E; TFAP2E; TFAP2E; ZNF611; ZNF611 (directAnnotation). TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2D; TFAP2D; TFAP2D; TFAP2D; TFAP2D; TFAP2D; TFAP2E; TFAP2E; TFAP2E; TFAP2E; TFAP2E; TFAP2E; TFAP2E (inferredBy_Orthology).
MDM2transfac_pro__M01199TRIM28 (directAnnotation).
MDM2kznf__ZNF682_Isakova2017_SMiLE-seqZNF682 (directAnnotation).
MDM2transfac_pro__M03806ZBTB7C (directAnnotation).
MDM2metacluster_174.3MBD2; NFYA; NFYB; NFYC; PBX3 (directAnnotation).
MDM2metacluster_144.8ZNF30; ZNF30 (directAnnotation).
MDM2dbtfbs__GMEB1_K562_ENCSR928KOR_merged_N1GMEB1 (directAnnotation).
MDM2transfac_pro__M04918EGR1 (directAnnotation).
MDM2taipale_cyt_meth__ZNF460_NRMCGCCCCCCGN_eDBD_methZNF460 (directAnnotation).
MDM2taipale_cyt_meth__KLF12_NGCCGACGCCCW_FL_meth_reprKLF12 (directAnnotation).
MDM2metacluster_141.5NR3C1; THAP1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY2; YY2; ZNF597 (directAnnotation). YY1; YY1; YY1; YY2; ZFP42 (inferredBy_Orthology).
MDM2kznf__ZFP57_Imbeault2017_RP_ChIP-seqZFP57 (directAnnotation).
MDM2taipale_tf_pairs__ETV5_HES7_CCGGAANNNNNNCACGTG_CAPETV5; HES7 (directAnnotation).
MDM2transfac_pro__M01253CNOT3 (directAnnotation).
MDM2homer__NANTGCSGCA_Zfp57ZFP57 (directAnnotation).
MDM2kznf__ZNF383_Imbeault2017_OM_RCADEZNF383 (directAnnotation).
MDM2transfac_pro__M01090SMAD9 (inferredBy_Orthology).
MDM2transfac_pro__M07310SP5 (directAnnotation).
MDM2transfac_pro__M00938E2F1 (directAnnotation).
MDM2transfac_pro__M04817ZBTB33 (directAnnotation).
MDM2transfac_pro__M01088DEAF1 (inferredBy_Orthology).
MDM2transfac_pro__M12697ZNF142 (directAnnotation).
MDM2metacluster_23.9GLIS1; GLIS3; GLIS3; ZNF575 (directAnnotation). GLIS2; GLIS2; GLIS3; ZNF575; ZXDA; ZXDA; ZXDA; ZXDA; ZXDB; ZXDB; ZXDB; ZXDB; ZXDC; ZXDC; ZXDC; ZXDC (inferredBy_Orthology).
MDM2transfac_pro__M04916TAF1 (directAnnotation).
MDM2transfac_pro__M02786PLAGL1 (inferredBy_Orthology).
MDM2metacluster_67.2ZNF501 (directAnnotation). ACAA1; E2F2; E2F2; E2F3; E2F3; FOXN4 (inferredBy_Orthology).
MDM2tfdimers__MD00483ZBTB14 (directAnnotation).
MDM2transfac_pro__M00803E2F1; E2F3; E2F4; TFDP1 (directAnnotation).
MDM2transfac_pro__M01303SP1 (directAnnotation).
MDM2metacluster_143.13ZBTB7A (directAnnotation).
MDM2transfac_pro__M07387ZBTB7A (directAnnotation).
MDM2taipale_tf_pairs__ETV5_HES7_NNCACGTGNNNNCCGGAANN_CAPETV5; HES7 (directAnnotation).
MDM2transfac_public__M00189TFAP2A; TFAP2B; TFAP2C (directAnnotation).
MDM2taipale_tf_pairs__E2F1_ELK1_SGCGCNNNNNNNNNNCGGAAGN_CAP_reprE2F1; ELK1 (directAnnotation).
MDM2transfac_pro__M02898SMAD3 (directAnnotation).
MDM2kznf__ZNF548_Imbeault2017_OM_RCADEZNF548 (directAnnotation).
MDM2kznf__ZNF2_Imbeault2017_OM_RCADEZNF2 (directAnnotation).
MDM2taipale_tf_pairs__TFAP2C_HES7_NNCRCGYGNNNNNNSCCNNNGGS_CAP_reprHES7; TFAP2C (directAnnotation).
MDM2taipale_tf_pairs__ETV5_TCF3_RNCGGAAGNNNNNCASSTGN_CAP_reprETV5; TCF3 (directAnnotation).
MDM2taipale_cyt_meth__E2F2_NCGCGCGCGCM_eDBD_methE2F2 (directAnnotation).
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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.

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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.
Target nameDrug nameDrug IDDrug type
MDM2"Cis-[4,5-Bis-(4-Bromophenyl)-2-(2-Ethoxy-4-Methoxyphenyl)-4,5-Dihydroimidazol-1-Yl]-[4-(2-Hydroxyet

DB02872

small molecule
MDM2"Cis-[4,5-Bis-(4-Chlorophenyl)-2-(2-Isopropoxy-4-Methoxyphenyl)-4,5-Dihyd Roimidazol-1-Yl]-Piperazin

DB04144

small molecule
MDM2"Zinc acetate"

DB14487

small molecule
MDM2"Zinc chloride"

DB14533

small molecule
MDM2"Zinc sulfate, unspecified form"

DB14548

small molecule
MDM2"Zinc"

DB01593

small molecule
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1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."