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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene (This gene does not contain this module)

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor (This gene does not contain this module)

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Acts as a drug target< (This gene does not contain this module)

Gene: LTN1

Summary for LTN1

Gene informationGene symbol

LTN1

Ensembl ID

ENSG00000198862

Entrez ID

26046

Gene namelisterin E3 ubiquitin protein ligase 1
SynonymsC21orf10|C21orf98|FLJ11053|KIAA0714|LISTERIN|RNF160|ZNF294
Gene typeprotein_coding
UniProtAcc

O94822


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Dataset with differentially expressed gene: LTN1

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE168668

LNCaP cell lineCell lineProstate cancerProstate cancerTargeted therapyenzalutamideNAMalignant cells0.6375460.00e+00

GSE108397

451Lu cell lineCell lineMelanomaMelanomaTargeted therapyPLX-4720NAMalignant cells-0.2679570.00e+00

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Expression of LTN1 in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to LTN1

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.

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MicroRNAs (miRNA) regulating LTN1

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
LTN1hsa-miR-590-3p99.6977NM_001320766
LTN1hsa-miR-520d-5p98.9674NM_001320766
LTN1hsa-miR-524-5p98.9674NM_001320766
LTN1hsa-miR-6833-3p98.9341NM_001320766
LTN1hsa-miR-4768-5p98.4406NM_001320766
LTN1hsa-miR-367197.7726NM_001320766
LTN1hsa-miR-5692a96.7444NM_001320766
LTN1hsa-miR-477596.4083NM_001320766
LTN1hsa-miR-428296.298NM_001320766
LTN1hsa-miR-372-5p95.6951NM_001320766
LTN1hsa-miR-5583-5p95.0724NM_001320766
LTN1hsa-miR-3129-3p95.0724NM_001320766
LTN1hsa-miR-1212594.8916NM_001320766
LTN1hsa-miR-330-3p92.605NM_001320766
LTN1hsa-miR-60690.8446NM_001320766
LTN1hsa-miR-500a-5p90.6715NM_001320766
LTN1hsa-miR-153-5p90.6693NM_001320766
LTN1hsa-miR-193b-5p89.2361NM_001320766
LTN1hsa-miR-548t-3p89.2308NM_001320766
LTN1hsa-miR-548ap-3p89.2308NM_001320766
LTN1hsa-miR-548aa89.2308NM_001320766
LTN1hsa-miR-1277-5p89.1118NM_001320766
LTN1hsa-miR-6855-5p88.8245NM_001320766
LTN1hsa-miR-312388.4834NM_001320766
LTN1hsa-miR-380-3p88.3313NM_001320766
LTN1hsa-miR-6882-5p88.1926NM_001320766
LTN1hsa-miR-6512-5p87.2202NM_001320766
LTN1hsa-miR-317087.0193NM_001320766
LTN1hsa-miR-544a86.9305NM_001320766
LTN1hsa-miR-126-5p85.9952NM_001320766
LTN1hsa-miR-335-3p85.9431NM_001320766
LTN1hsa-miR-4795-3p85.7963NM_001320766
LTN1hsa-miR-447085.5068NM_001320766
LTN1hsa-miR-2115-5p84.6196NM_001320766
LTN1hsa-let-7b-3p84.3324NM_001320766
LTN1hsa-let-7a-3p84.3324NM_001320766
LTN1hsa-miR-98-3p84.3324NM_001320766
LTN1hsa-let-7f-1-3p84.3324NM_001320766
LTN1hsa-miR-808482.7597NM_001320766
LTN1hsa-miR-6809-3p82.5469NM_001320766
LTN1hsa-miR-7154-5p82.5005NM_001320766
LTN1hsa-miR-6873-3p81.5052NM_001320766
LTN1hsa-miR-5692c81.1055NM_001320766
LTN1hsa-miR-5692b81.1055NM_001320766
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Motifs and transcription factors (TFs) regulating LTN1

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
LTN1taipale_tf_pairs__ETS2_RCCGGAAGTG_HTETS2 (directAnnotation).
LTN1jaspar__MA1483.2ELF2 (directAnnotation).
LTN1hdpi__ETV4ETV4 (directAnnotation).
LTN1transfac_pro__M06071ZNF814 (directAnnotation).
LTN1transfac_pro__M04950EGR1 (directAnnotation).
LTN1taipale_tf_pairs__ETV2_HES7_RSCGGAANNNNNNNCACGTGNN_CAP_reprETV2; HES7 (directAnnotation).
LTN1taipale_tf_pairs__ERF_HES7_NCCGGAANNNNNNCACGYGNN_CAP_reprERF; HES7 (directAnnotation).
LTN1transfac_pro__M05427ZNF516 (directAnnotation).
LTN1metacluster_166.2ELK4; ETS1; ETS1; ETV1; ETV3; ETV4; ETV5; ETV7 (directAnnotation). GABPA (inferredBy_Orthology).
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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.

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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.



1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."