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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene (This gene does not contain this module)

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor (This gene does not contain this module)

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Acts as a drug target< (This gene does not contain this module)

Gene: LIPA

Summary for LIPA

Gene informationGene symbol

LIPA

Ensembl ID

ENSG00000107798

Entrez ID

3988

Gene namelipase A, lysosomal acid type
SynonymsCESD|LAL
Gene typeprotein_coding
UniProtAcc

P38571


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Dataset with differentially expressed gene: LIPA

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE140440

DU145 and PC cell linesCell lineProstate cancerProstate cancerChemotherapydocetaxelNAMalignant cells0.9924911.56e-04

GSE169246_PacBlood

patientsPeripheral blood mononuclear cellsBreast cancerAdvanced triple-negative breast cancer (TNBC)ChemotherapypaclitaxelpostcDCs0.2758547.68e-03

GSE169246_PacTissue

patientsTumor tissueBreast cancerAdvanced triple-negative breast cancer (TNBC)ChemotherapypaclitaxelpostMono/Macro-0.2682112.11e-04

GSE169246_PacTissue

patientsTumor tissueBreast cancerAdvanced triple-negative breast cancer (TNBC)ChemotherapypaclitaxelpreMono/Macro0.5584767.01e-18

GSE169246_PacAteTissue

patientsTumor tissueBreast cancerAdvanced triple-negative breast cancer (TNBC)Immunotherapyatezolizumab + paclitaxelpreMono/Macro-0.8539251.99e-08

GSE164551

patientsBone marrow aspirateMultiple myelomaRefractory multiple myeloma (MM)ImmunotherapyCAR-TNAMono/Macro-0.2985282.82e-13

GSE162117

patientsPeripheral blood mononuclear cellsAcute myeloid leukemiaTefractory acute myeloid leukemia (AML)Targeted therapyficlatuzumabpostMalignant cells0.3214340.00e+00

GSE162117

patientsPeripheral blood mononuclear cellsAcute myeloid leukemiaTefractory acute myeloid leukemia (AML)Targeted therapyficlatuzumabpreMalignant cells0.3366990.00e+00

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Expression of LIPA in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to LIPA

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.

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MicroRNAs (miRNA) regulating LIPA

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
LIPAhsa-miR-1250-3p95.0647NM_001127605
LIPAhsa-miR-148b-3p94.7617NM_001127605
LIPAhsa-miR-148a-3p94.7617NM_001127605
LIPAhsa-miR-152-3p94.7617NM_001127605
LIPAhsa-miR-431994.7447NM_000235
LIPAhsa-miR-125a-5p94.5046NM_000235
LIPAhsa-miR-125b-5p94.5046NM_000235
LIPAhsa-miR-808793.7934NM_001127605
LIPAhsa-miR-446491.7664NM_001127605
LIPAhsa-miR-474891.7664NM_001127605
LIPAhsa-miR-3145-3p90.1442NM_001127605
LIPAhsa-miR-57890.0616NM_001127605
LIPAhsa-miR-499a-5p89.8537NM_001127605
LIPAhsa-miR-4701-3p89.2235NM_001127605
LIPAhsa-miR-6736-5p89.2235NM_001127605
LIPAhsa-miR-126289.2235NM_001127605
LIPAhsa-miR-315387.6587NM_001127605
LIPAhsa-miR-524-5p87.1839NM_001127605
LIPAhsa-miR-520d-5p87.1839NM_001127605
LIPAhsa-miR-6739-5p86.8178NM_001127605
LIPAhsa-miR-6733-5p86.8178NM_001127605
LIPAhsa-miR-10524-5p86.2791NM_001127605
LIPAhsa-miR-1212285.9375NM_001127605
LIPAhsa-miR-519083.7833NM_001127605
LIPAhsa-miR-3184-3p83.6229NM_000235
LIPAhsa-miR-570-3p82.6943NM_001127605
LIPAhsa-miR-2355-3p82.4582NM_001127605
LIPAhsa-miR-4789-3p81.1586NM_001127605
LIPAhsa-miR-3074-3p80.1323NM_001127605
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Motifs and transcription factors (TFs) regulating LIPA

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
LIPAhdpi__HIP2UBE2K (directAnnotation).
LIPAkznf__ZNF441_Imbeault2017_RP_RCADEZNF441 (directAnnotation).
LIPAmetacluster_22.37BACH1 (directAnnotation).
LIPAmetacluster_22.11NFE2 (directAnnotation).
LIPAmetacluster_22.33MAFK (inferredBy_Orthology).
LIPAmetacluster_22.39NFE2L2 (directAnnotation).
LIPAtransfac_pro__M05807ZNF628 (inferredBy_Orthology).
LIPAnitta__Ets98B_TTCCCC20NTA_KH_TKGCGGATGCN_m1_c3SPDEF (inferredBy_Orthology).
LIPAmetacluster_144.10ZNF100 (directAnnotation).
LIPAtransfac_pro__M05670ZNF37A (directAnnotation).
LIPAnitta__Rfx_TGTGAA40NTAC_KK_GTTGCNNNNNGCAAC_m2_c2RFX1; RFX2; RFX3; RFX4; RFX6; RFX8 (inferredBy_Orthology).
LIPAtaipale__VENTX_DBD_SSYTAATCGRWAANCGATTAR_reprVENTX (directAnnotation).
LIPAtransfac_pro__M06429ZSCAN2 (directAnnotation).
LIPAtransfac_pro__M06251ZSCAN2 (inferredBy_Orthology).
LIPAtransfac_pro__M06394ZNF761 (directAnnotation).
LIPAkznf__ZNF25_Imbeault2017_RP_ChIP-seqZNF25 (directAnnotation).
LIPAtaipale_tf_pairs__FLI1_CEBPD_RNCGGANNTTGCGCAAN_CAPCEBPD; FLI1 (directAnnotation).
LIPAtaipale_tf_pairs__MGA_PITX1_RGGTGNTAAKCCN_CAP_reprMGA; PITX1 (directAnnotation).
LIPAtransfac_pro__M06349ZNF629 (inferredBy_Orthology).
LIPAtaipale_tf_pairs__ELK1_TEF_NSCGGAWNTTACGTAAN_CAPELK1; TEF (directAnnotation).
LIPAdbtfbs__ZNF610_HEK293_ENCSR691TXI_merged_N1ZNF610 (directAnnotation).
LIPAtaipale_cyt_meth__ELF3_NTGTGCGGATGCN_FL_reprELF3 (directAnnotation).
LIPAmetacluster_141.10THAP1; THAP1; THAP1 (directAnnotation).
LIPAhocomoco__HSF1_MOUSE.H11MO.1.AHSF1 (inferredBy_Orthology).
LIPAmetacluster_167.7IRF8 (inferredBy_Orthology).
LIPAtfdimers__MD00056EP300; ZEB1 (directAnnotation).
LIPAtransfac_pro__M05605GATA6 (inferredBy_Orthology).
LIPAmetacluster_22.21NFE2L2 (inferredBy_Orthology).
LIPAtransfac_pro__M05985ZNF394 (inferredBy_Orthology).
LIPAmetacluster_103.2ZNF136; ZNF680 (directAnnotation).
LIPAtfdimers__MD00409ETS1; YY2 (directAnnotation).
LIPAtaipale_tf_pairs__TEAD4_ETV4_RCCGGAAATRCC_CAPETV4; TEAD4 (directAnnotation).
LIPAtaipale_tf_pairs__HOXB2_ETV1_ACCGGAAATGA_CAPETV1; HOXB2 (directAnnotation).
LIPAmetacluster_167.5EHF; ELF5; NFATC3; SPI1; SPI1; SPI1; SPI1; SPI1; SPI1; SPI1; SPI1; SPI1; SPI1; SPI1; SPIB; SPIB; SPIB; SPIB; SPIB; SPIB; SPIB; SPIB; SPIB; SPIB; SPIC; SPIC; STAT5A (directAnnotation). ETS1; SPI1; SPI1; SPI1; SPI1; SPI1; SPI1; SPIB; SPIC (inferredBy_Orthology).
LIPAtransfac_pro__M05935ZNF382 (directAnnotation).
LIPAtfdimers__MD00158DBP; ZNF354C (directAnnotation).
LIPAtaipale_tf_pairs__ELK1_FOXI1_RSCGGAANRWMAACAN_CAP_reprELK1; FOXI1 (directAnnotation).
LIPAkznf__CTCF_Rhee2011.3_ChIP-exoCTCF (directAnnotation).
LIPAtransfac_pro__M06504ZFP62 (directAnnotation).
LIPAtfdimers__MD00029IKZF2; NKX3-2 (directAnnotation).
LIPAhomer__ATTGCGCAAC_CEBPCEBPB (inferredBy_Orthology).
LIPAtfdimers__MD00208IRF1; LTF (directAnnotation).
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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.

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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.



1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."