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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene (This gene does not contain this module)

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor (This gene does not contain this module)

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Acts as a drug target

Gene: LAMC1

Summary for LAMC1

Gene informationGene symbol

LAMC1

Ensembl ID

ENSG00000135862

Entrez ID

3915

Gene namelaminin subunit gamma 1
SynonymsLAMB2
Gene typeprotein_coding
UniProtAcc

P11047


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Dataset with differentially expressed gene: LAMC1

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE168668

LNCaP cell lineCell lineProstate cancerProstate cancerTargeted therapyenzalutamideNAMalignant cells-0.2687030.00e+00

GSE175716

PDXTumor tissueLiver cancerAdvanced hepatocellular carcinomaTargeted therapysorafenibNAMalignant cells0.3690774.21e-06

GSE164897_VemTra

A375 cell lineCell lineMelanomaB+E2:E57RAFV600E-mutant melanomaTargeted therapyvemurafenib + trametinibNAMalignant cells0.5145920.00e+00

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Expression of LAMC1 in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to LAMC1

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.

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MicroRNAs (miRNA) regulating LAMC1

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
LAMC1hsa-miR-124-3p99.8861NM_002293
LAMC1hsa-miR-506-3p99.8861NM_002293
LAMC1hsa-miR-892c-5p97.5132NM_002293
LAMC1hsa-miR-22-3p97.4788NM_002293
LAMC1hsa-miR-316396.7812NM_002293
LAMC1hsa-miR-506-5p95.8883NM_002293
LAMC1hsa-miR-314895.3478NM_002293
LAMC1hsa-miR-6885-3p95.2366NM_002293
LAMC1hsa-miR-447094.6519NM_002293
LAMC1hsa-miR-76594.0182NM_002293
LAMC1hsa-miR-323a-3p93.8015NM_002293
LAMC1hsa-miR-11181-3p93.744NM_002293
LAMC1hsa-miR-4659a-3p93.7246NM_002293
LAMC1hsa-miR-4659b-3p93.7246NM_002293
LAMC1hsa-miR-5582-5p93.5394NM_002293
LAMC1hsa-miR-318293.3596NM_002293
LAMC1hsa-miR-480392.9018NM_002293
LAMC1hsa-miR-426191.7857NM_002293
LAMC1hsa-miR-806791.78NM_002293
LAMC1hsa-miR-6508-5p91.6559NM_002293
LAMC1hsa-miR-96-5p91.4417NM_002293
LAMC1hsa-miR-377-3p91.3618NM_002293
LAMC1hsa-miR-205-5p91.1867NM_002293
LAMC1hsa-miR-7847-3p91.1037NM_002293
LAMC1hsa-miR-427589.5745NM_002293
LAMC1hsa-miR-4676-3p88.5139NM_002293
LAMC1hsa-miR-892c-3p88.5139NM_002293
LAMC1hsa-miR-452-5p88.5139NM_002293
LAMC1hsa-miR-605-3p88.4656NM_002293
LAMC1hsa-miR-1271-5p87.9118NM_002293
LAMC1hsa-miR-1213387.9118NM_002293
LAMC1hsa-miR-797487.8641NM_002293
LAMC1hsa-miR-4529-5p87.8319NM_002293
LAMC1hsa-miR-3942-3p87.6499NM_002293
LAMC1hsa-miR-6832-5p87.5899NM_002293
LAMC1hsa-miR-29a-3p87.1651NM_002293
LAMC1hsa-miR-29b-3p87.1651NM_002293
LAMC1hsa-miR-29c-3p87.1651NM_002293
LAMC1hsa-miR-797587.058NM_002293
LAMC1hsa-miR-153-3p86.8157NM_002293
LAMC1hsa-miR-548as-3p86.4989NM_002293
LAMC1hsa-miR-340-5p85.8608NM_002293
LAMC1hsa-miR-147b-5p85.8046NM_002293
LAMC1hsa-miR-5196-5p85.7056NM_002293
LAMC1hsa-miR-4747-5p85.7056NM_002293
LAMC1hsa-miR-193b-3p85.0183NM_002293
LAMC1hsa-miR-193a-3p85.0183NM_002293
LAMC1hsa-miR-376b-3p84.798NM_002293
LAMC1hsa-miR-376a-3p84.798NM_002293
LAMC1hsa-miR-6873-5p84.3357NM_002293
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Motifs and transcription factors (TFs) regulating LAMC1

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
LAMC1metacluster_55.3E2F6; EGR1; NRF1; NRF1; NRF1; NRF1; NRF1; NRF1; NRF1; NRF1; NRF1; NRF1; ZBTB2; ZSCAN10 (directAnnotation). NFE2L1; NRF1; NRF1; NRF1 (inferredBy_Orthology).
LAMC1transfac_pro__M00652NRF1 (directAnnotation).
LAMC1transfac_pro__M04918EGR1 (directAnnotation).
LAMC1hdpi__TP73TP73 (directAnnotation).
LAMC1transfac_pro__M06135ZNF28 (directAnnotation).
LAMC1taipale_cyt_meth__ZBTB2_NTTTMCGGTWAN_eDBDZBTB2 (directAnnotation).
LAMC1kznf__ZBTB14_Schmitges2016_RCADEZBTB14 (directAnnotation).
LAMC1taipale_tf_pairs__E2F3_HES7_NNNNGCGCSNNNNNCACGTGNN_CAPE2F3; HES7 (directAnnotation).
LAMC1transfac_pro__M02089E2F3 (directAnnotation).
LAMC1taipale_cyt_meth__E2F2_NCGCGCGCGCM_eDBD_methE2F2 (directAnnotation).
LAMC1transfac_pro__M00803E2F1; E2F3; E2F4; TFDP1 (directAnnotation).
LAMC1transfac_pro__M04817ZBTB33 (directAnnotation).
LAMC1metacluster_143.13ZBTB7A (directAnnotation).
LAMC1transfac_pro__M02861GATA6 (inferredBy_Orthology).
LAMC1tfdimers__MD00483ZBTB14 (directAnnotation).
LAMC1cisbp__M07938E2F1 (directAnnotation).
LAMC1cisbp__M00968MTF2 (directAnnotation).
LAMC1jaspar__MA0535.1SMAD9 (inferredBy_Orthology).
LAMC1metacluster_15.1E2F4; E2F4; E2F4; E2F4; E2F7; ZFP69B (directAnnotation). E2F4 (inferredBy_Orthology).
LAMC1metacluster_15.2E2F1; E2F1; E2F1; E2F1; E2F1; E2F3; E2F4; E2F4; E2F4; E2F6; E2F6; E2F6; E2F6; E2F6; E2F6; E2F6; E2F7; TFDP1; TFDP2; ZNF566; ZNF566; ZNF574 (directAnnotation). E2F3; E2F3; E2F4 (inferredBy_Orthology).
LAMC1taipale_tf_pairs__E2F1_HES7_RRCRCGYGYNNNNSGCGCSN_CAP_reprE2F1; HES7 (directAnnotation).
LAMC1jaspar__MA1122.1TFDP1 (directAnnotation).
LAMC1taipale_tf_pairs__ETV5_HES7_NNCACGTGNNNNCCGGAANN_CAPETV5; HES7 (directAnnotation).
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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.

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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.
Target nameDrug nameDrug IDDrug type
LAMC1"Lanoteplase"

DB06245

biotech
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1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."