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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene (This gene does not contain this module)

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor (This gene does not contain this module)

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Acts as a drug target< (This gene does not contain this module)

Gene: KDM5A

Summary for KDM5A

Gene informationGene symbol

KDM5A

Ensembl ID

ENSG00000073614

Entrez ID

5927

Gene namelysine demethylase 5A
SynonymsJARID1A|RBBP2
Gene typeprotein_coding
UniProtAcc

P29375


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Dataset with differentially expressed gene: KDM5A

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE199333

patientsBone marrow aspirateAcute myeloid leukemiaPrimary FLT3-ITD-mutated acute myeloid leukemia (AML)Targeted therapygilteritinibpreMalignant cells-0.3304020.00e+00

GSE108397

451Lu cell lineCell lineMelanomaMelanomaTargeted therapyPLX-4720NAMalignant cells-0.2901875.58e-34

GSE175716

PDXTumor tissueLiver cancerAdvanced hepatocellular carcinomaTargeted therapysorafenibNAMalignant cells-0.5074980.00e+00

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Expression of KDM5A in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to KDM5A

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.

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MicroRNAs (miRNA) regulating KDM5A

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
KDM5Ahsa-miR-520d-5p99.1624NM_001042603
KDM5Ahsa-miR-524-5p99.1624NM_001042603
KDM5Ahsa-miR-4786-3p98.1505NM_001042603
KDM5Ahsa-miR-453397.7467NM_001042603
KDM5Ahsa-miR-10527-5p96.7082NM_001042603
KDM5Ahsa-miR-129095.7662NM_001042603
KDM5Ahsa-miR-1252-5p95.4984NM_001042603
KDM5Ahsa-miR-4694-3p94.8894NM_001042603
KDM5Ahsa-miR-3613-3p94.1108NM_001042603
KDM5Ahsa-miR-4715-3p94.1012NM_001042603
KDM5Ahsa-miR-497-3p94.026NM_001042603
KDM5Ahsa-miR-290993.9843NM_001042603
KDM5Ahsa-miR-133a-5p93.9794NM_001042603
KDM5Ahsa-miR-5003-3p93.619NM_001042603
KDM5Ahsa-miR-4446-5p92.9369NM_001042603
KDM5Ahsa-miR-5011-5p92.787NM_001042603
KDM5Ahsa-miR-477392.7431NM_001042603
KDM5Ahsa-miR-190a-3p92.5667NM_001042603
KDM5Ahsa-miR-3177-5p92.3271NM_001042603
KDM5Ahsa-miR-426291.5968NM_001042603
KDM5Ahsa-miR-1212391.5458NM_001042603
KDM5Ahsa-miR-651-3p91.2966NM_001042603
KDM5Ahsa-miR-212-3p91.1936NM_001042603
KDM5Ahsa-miR-64191.1369NM_001042603
KDM5Ahsa-miR-3617-5p91.1369NM_001042603
KDM5Ahsa-miR-7843-3p90.6192NM_001042603
KDM5Ahsa-miR-426190.2043NM_001042603
KDM5Ahsa-miR-6828-5p89.464NM_001042603
KDM5Ahsa-miR-607989.383NM_001042603
KDM5Ahsa-miR-4684-3p89.3356NM_001042603
KDM5Ahsa-miR-132-3p89.2651NM_001042603
KDM5Ahsa-miR-1213689.1019NM_001042603
KDM5Ahsa-miR-147b-5p89.101NM_001042603
KDM5Ahsa-miR-60088.9542NM_001042603
KDM5Ahsa-miR-181a-5p88.7887NM_001042603
KDM5Ahsa-miR-181d-5p88.7887NM_001042603
KDM5Ahsa-miR-181b-5p88.7887NM_001042603
KDM5Ahsa-miR-181c-5p88.7887NM_001042603
KDM5Ahsa-miR-848588.6192NM_001042603
KDM5Ahsa-miR-942-5p88.3567NM_001042603
KDM5Ahsa-miR-23c88.119NM_001042603
KDM5Ahsa-miR-23a-3p88.119NM_001042603
KDM5Ahsa-miR-23b-3p88.119NM_001042603
KDM5Ahsa-miR-24-3p87.1024NM_001042603
KDM5Ahsa-miR-194-5p86.6221NM_001042603
KDM5Ahsa-miR-2355-3p86.1356NM_001042603
KDM5Ahsa-miR-146a-3p86.1326NM_001042603
KDM5Ahsa-miR-876-5p85.8843NM_001042603
KDM5Ahsa-miR-548e-5p85.8616NM_001042603
KDM5Ahsa-miR-199a-3p85.1858NM_001042603
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Motifs and transcription factors (TFs) regulating KDM5A

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
KDM5Ataipale_tf_pairs__ETS2_RCCGGAAGTG_HTETS2 (directAnnotation).
KDM5Ahdpi__ETV4ETV4 (directAnnotation).
KDM5Adbtfbs__ZNF407_representative_N1ZNF407 (directAnnotation).
KDM5Ataipale_tf_pairs__GCM1_SPDEF_RTRSKGGCGGANNNNNATCCNNN_CAP_reprGCM1; SPDEF (directAnnotation).
KDM5Ataipale_tf_pairs__TFAP2C_E2F8_NNTCCCGCNNNCCNNNGGC_CAP_reprE2F8; TFAP2C (directAnnotation).
KDM5Ametacluster_35.2EGR1; ELF1; ELF1; ELF1; ELF2; ELF2; ELF3; ELF4; ELF4; ELK1; ELK3; ELK4; ERG; ETS1; ETS1; ETS2; ETV1; ETV1; ETV5; ETV5; ETV6; FLI1; FLI1; GABPA; GABPA; GABPA; GABPB1; GABPB1; GABPB1; ZBTB7A (directAnnotation). ELF2; ELF2; ERG; ERG; ETS2; FLI1; GABPA; IKZF3; SPIC (inferredBy_Orthology).
KDM5Atfdimers__MD00391KLF4 (directAnnotation).
KDM5Ataipale_tf_pairs__GCM1_ETV1_RTRNNGGCGGAAGTN_CAPETV1; GCM1 (directAnnotation).
KDM5Atfdimers__MD00441OVOL2; RELA (directAnnotation).
KDM5Ametacluster_24.5ZNF675; ZNF675 (directAnnotation).
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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.

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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.



1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."