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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene (This gene does not contain this module)

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor (This gene does not contain this module)

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Acts as a drug target

Gene: KCNN4

Summary for KCNN4

Gene informationGene symbol

KCNN4

Ensembl ID

ENSG00000104783

Entrez ID

3783

Gene namepotassium calcium-activated channel subfamily N member 4
SynonymshIKCa1|hKCa4|hSK4|IK|KCa3.1
Gene typeprotein_coding
UniProtAcc

NA


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Dataset with differentially expressed gene: KCNN4

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE164897_Vem

A375 cell lineCell lineMelanomaBRAFV600E-mutant melanomaTargeted therapyvemurafenibNAMalignant cells0.2553770.00e+00

GSE164897_VemCob

A375 cell lineCell lineMelanomaBRAFV600E-mutant melanomaTargeted therapyvemurafenib + combimetinibNAMalignant cells-0.4596780.00e+00

GSE164897_VemTra

A375 cell lineCell lineMelanomaB+E2:E57RAFV600E-mutant melanomaTargeted therapyvemurafenib + trametinibNAMalignant cells-0.3947850.00e+00

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Expression of KCNN4 in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to KCNN4

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.

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MicroRNAs (miRNA) regulating KCNN4

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
KCNN4hsa-miR-520d-5p96.7179NM_002250
KCNN4hsa-miR-524-5p96.7179NM_002250
KCNN4hsa-miR-4524a-5p94.4724NM_002250
KCNN4hsa-miR-4524b-5p94.4724NM_002250
KCNN4hsa-miR-6504-3p93.9714NM_002250
KCNN4hsa-miR-10399-5p93.9714NM_002250
KCNN4hsa-miR-556-3p92.3704NM_002250
KCNN4hsa-miR-472991.4653NM_002250
KCNN4hsa-miR-103a-3p88.0642NM_002250
KCNN4hsa-miR-10788.0642NM_002250
KCNN4hsa-miR-15b-5p86.3783NM_002250
KCNN4hsa-miR-195-5p86.3783NM_002250
KCNN4hsa-miR-16-5p86.3783NM_002250
KCNN4hsa-miR-15a-5p86.3783NM_002250
KCNN4hsa-miR-875-3p83.6768NM_002250
KCNN4hsa-miR-497-5p83.4104NM_002250
KCNN4hsa-miR-424-5p83.4104NM_002250
KCNN4hsa-miR-6838-5p83.4104NM_002250
KCNN4hsa-miR-302c-5p82.8405NM_002250
KCNN4hsa-miR-314381.298NM_002250
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Motifs and transcription factors (TFs) regulating KCNN4

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
KCNN4metacluster_137.2ATF3; BACH2; BATF; BATF; BATF; BATF; BATF3; FOS; FOS; FOS; FOS; FOS; FOS; FOS; FOS; FOS; FOS; FOSB; FOSB; FOSB; FOSB; FOSB; FOSL1; FOSL1; FOSL1; FOSL1; FOSL1; FOSL2; FOSL2; FOSL2; FOSL2; FOSL2; FOSL2; FOSL2; INSM2; JUN; JUN; JUN; JUN; JUN; JUN; JUN; JUN; JUN; JUN; JUN; JUN; JUNB; JUNB; JUNB; JUNB; JUNB; JUND; JUND; JUND; JUND; JUND; SMARCC1 (directAnnotation). ATF3; ATF3; BATF; FOS; FOSB; FOSL1; FOSL1; FOSL2; FOSL2; FOSL2; JUN; JUN; JUN; JUN; JUN; JUN; JUN; JUNB; JUND; JUND; JUND; JUND (inferredBy_Orthology).
KCNN4metacluster_157.2ATF3; ATF3; ATF3; BACH1; BACH1; BACH1; BACH2; BACH2; BACH2; BACH2; BATF; BATF; BCL11A; FOS; FOS; FOS; FOS; FOS; FOS; FOSB; FOSL1; FOSL1; FOSL1; FOSL1; FOSL1; FOSL1; FOSL2; FOSL2; FOSL2; JDP2; JDP2; JDP2; JDP2; JDP2; JDP2; JDP2; JUN; JUN; JUN; JUN; JUN; JUNB; JUNB; JUNB; JUNB; JUNB; JUNB; JUND; JUND; JUND; JUND; JUND; JUND; JUND; JUND; JUND; MAF; MAFB; MAFF; MAFG; MAFK; NFE2; NFE2; NFE2; NFE2; NFE2; NFE2; NFE2L1; NFE2L1; NFE2L2; NFE2L3; ZNF3; ZSCAN5C (directAnnotation). FOSL1; JUN; JUN; JUN; JUNB; JUNB; JUND (inferredBy_Orthology).
KCNN4metacluster_22.34BACH2 (directAnnotation).
KCNN4metacluster_22.37BACH1 (directAnnotation).
KCNN4metacluster_22.18BACH2 (inferredBy_Orthology).
KCNN4metacluster_171.4TEAD1; TEAD1; TEAD1; TEAD1; TEAD3; TEAD3; TEAD4; TEAD4; TEAD4; TEAD4 (directAnnotation). TEAD1; TEAD2; TEAD4; TEAD4 (inferredBy_Orthology).
KCNN4metacluster_50.1BATF; BATF; BATF; BATF; BNC2; FOS; FOSB; FOSL1; FOSL1; IRF4; JUN; JUN; JUNB; JUNB; JUNB; JUNB; JUND; JUND; JUND; JUND; JUND; SMAD2; SMAD3 (directAnnotation). BATF; BATF; BATF; FOS; FOSL1; FOSL2; JDP2; JUN; JUN; JUND (inferredBy_Orthology).
KCNN4tfdimers__MD00561CRX (directAnnotation).
KCNN4taipale_tf_pairs__ETS2_RCCGGAAGTG_HTETS2 (directAnnotation).
KCNN4jaspar__MA1483.2ELF2 (directAnnotation).
KCNN4jaspar__MA1933.1SREBF2 (directAnnotation).
KCNN4swissregulon__hs__ETV6ETV6 (directAnnotation).
KCNN4taipale_tf_pairs__ELF2_NATGCGGAAGTR_HTELF2 (directAnnotation).
KCNN4cisbp__M08198ELF1 (directAnnotation).
KCNN4hdpi__ETV4ETV4 (directAnnotation).
KCNN4taipale_tf_pairs__GCM1_ETV4_RTGCGGGCGGAAGTR_CAPETV4; GCM1 (directAnnotation).
KCNN4jaspar__MA1708.1ETV7 (directAnnotation).
KCNN4taipale_tf_pairs__GCM1_ELK1_RTGCGGGCGGAAGTN_CAP_2ELK1; GCM1 (directAnnotation).
KCNN4transfac_pro__M04748GABPA (directAnnotation).
KCNN4cisbp__M02645ETS1 (directAnnotation).
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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.

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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.
Target nameDrug nameDrug IDDrug type
KCNN4"Clotrimazole"

DB00257

small molecule
KCNN4"Halothane"

DB01159

small molecule
KCNN4"Quinine"

DB00468

small molecule
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1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."