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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene (This gene does not contain this module)

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor (This gene does not contain this module)

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Acts as a drug target

Gene: KCNN3

Summary for KCNN3

Gene informationGene symbol

KCNN3

Ensembl ID

ENSG00000143603

Entrez ID

3782

Gene namepotassium calcium-activated channel subfamily N member 3
SynonymshSK3|KCa2.3|SKCA3
Gene typeprotein_coding
UniProtAcc

Q9UGI6


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Dataset with differentially expressed gene: KCNN3

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE140440

DU145 and PC cell linesCell lineProstate cancerProstate cancerChemotherapydocetaxelNAMalignant cells3.882182.94e-03

GSE161801_IMiD

patientsBone marrow aspirateMultiple myelomaRefractory multiple myeloma (MM)Targeted therapypomalidomide + dexamethasone OR lenalidomide + dexamethasonepreMalignant cells-0.2617030.00e+00

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Expression of KCNN3 in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to KCNN3

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.

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MicroRNAs (miRNA) regulating KCNN3

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
KCNN3hsa-miR-5011-5p99.9999NM_170782
KCNN3hsa-miR-190a-3p99.9992NM_170782
KCNN3hsa-miR-311999.6211NM_001204087
KCNN3hsa-miR-4795-3p99.1259NM_170782
KCNN3hsa-miR-570-3p99.03NM_170782
KCNN3hsa-miR-135b-5p98.4775NM_001204087
KCNN3hsa-miR-135a-5p98.4775NM_001204087
KCNN3hsa-miR-50796.6796NM_170782
KCNN3hsa-miR-432496.192NM_001204087
KCNN3hsa-miR-55795.4319NM_170782
KCNN3hsa-miR-430695.0505NM_170782
KCNN3hsa-miR-892a94.9252NM_170782
KCNN3hsa-miR-126-5p94.6246NM_170782
KCNN3hsa-miR-504-3p94.4733NM_170782
KCNN3hsa-miR-66594.0104NM_001204087
KCNN3hsa-miR-4693-5p93.6533NM_170782
KCNN3hsa-miR-6513-3p93.5534NM_001204087
KCNN3hsa-miR-3680-3p91.8851NM_170782
KCNN3hsa-miR-548c-3p91.2411NM_170782
KCNN3hsa-miR-6867-5p90.8909NM_001204087
KCNN3hsa-miR-432-5p90.6165NM_170782
KCNN3hsa-miR-1213690.0946NM_001204087
KCNN3hsa-miR-122-5p89.3902NM_170782
KCNN3hsa-miR-483-3p89.2687NM_170782
KCNN3hsa-miR-4747-5p88.9299NM_170782
KCNN3hsa-miR-5196-5p88.9299NM_170782
KCNN3hsa-miR-6505-5p88.447NM_170782
KCNN3hsa-miR-561-5p88.2806NM_001204087
KCNN3hsa-miR-5582-3p88.0255NM_170782
KCNN3hsa-miR-518687.7094NM_001204087
KCNN3hsa-miR-128-3p87.6401NM_001204087
KCNN3hsa-miR-216a-3p87.6401NM_001204087
KCNN3hsa-miR-499a-5p87.4082NM_170782
KCNN3hsa-miR-766-3p87.3999NM_170782
KCNN3hsa-miR-651-3p86.9213NM_001204087
KCNN3hsa-miR-3663-5p86.8405NM_170782
KCNN3hsa-miR-464486.8104NM_170782
KCNN3hsa-miR-185-5p86.8104NM_170782
KCNN3hsa-miR-211786.6819NM_170782
KCNN3hsa-miR-568386.3391NM_001204087
KCNN3hsa-miR-338-5p85.8611NM_170782
KCNN3hsa-miR-498-3p85.8486NM_001204087
KCNN3hsa-miR-664b-3p85.7726NM_170782
KCNN3hsa-miR-579-3p85.7726NM_170782
KCNN3hsa-miR-656-3p85.2181NM_170782
KCNN3hsa-miR-6504-5p84.9323NM_001204087
KCNN3hsa-miR-3085-3p84.9323NM_001204087
KCNN3hsa-miR-3064-5p84.9323NM_001204087
KCNN3hsa-miR-427984.6327NM_170782
KCNN3hsa-miR-149-5p84.5813NM_001204087
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Motifs and transcription factors (TFs) regulating KCNN3

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
KCNN3metacluster_2.8IRF4; IRF5; IRF6; IRF9 (directAnnotation). IRF3; IRF5; IRF5; IRF6 (inferredBy_Orthology).
KCNN3metacluster_21.5HOXB2; HSF1; HSF1; HSF1; HSF1; HSF1; HSF1; HSF1; HSF1; HSF2; HSF2; HSF2; HSF2; HSF2; HSF2; HSF4; HSF4; HSF4 (directAnnotation). HSF1; HSF1; HSF1; HSF1; HSF1; HSF1; HSF1; HSF2; HSF2; HSF2; HSF2; HSF4; HSF4; HSF4; HSF4; HSF5; HSF5; HSF5; HSF5; HSFX1; HSFX1; HSFX1; HSFX1; HSFX2; HSFX2; HSFX2; HSFX2; HSFX3; HSFX3; HSFX3; HSFX3; HSFX4; HSFX4; HSFX4; HSFX4; HSFY1; HSFY1; HSFY1; HSFY1; HSFY2; HSFY2; HSFY2; HSFY2 (inferredBy_Orthology).
KCNN3transfac_pro__M05440NKX2-3 (directAnnotation).
KCNN3transfac_pro__M06292ZNF766 (directAnnotation).
KCNN3metacluster_161.27LHX4 (directAnnotation).
KCNN3tfdimers__MD00602MYB; STAT6 (directAnnotation).
KCNN3metacluster_56.4HSF1; HSF2; HSF2; HSF4 (directAnnotation).
KCNN3metacluster_161.26ALX4 (directAnnotation).
KCNN3metacluster_56.5HSF1; HSF1; HSF2 (directAnnotation). HSF1; HSF2; HSF4; HSF5; HSFX1; HSFX2; HSFX3; HSFX4; HSFY1; HSFY2 (inferredBy_Orthology).
KCNN3metacluster_161.31PRRX2 (directAnnotation).
KCNN3metacluster_141.2E2F2; E2F3 (directAnnotation).
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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.

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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.
Target nameDrug nameDrug IDDrug type
KCNN3"Dequalinium"

DB04209

small molecule
KCNN3"Rimtuzalcap"

DB16733

small molecule
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1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."