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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene (This gene does not contain this module)

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor (This gene does not contain this module)

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Acts as a drug target

Gene: KCNA3

Summary for KCNA3

Gene informationGene symbol

KCNA3

Ensembl ID

ENSG00000177272

Entrez ID

3738

Gene namepotassium voltage-gated channel subfamily A member 3
SynonymsHLK3|HPCN3|Kv1.3|MK3
Gene typeprotein_coding
UniProtAcc

NA


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Dataset with differentially expressed gene: KCNA3

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE169246_PacBlood

patientsPeripheral blood mononuclear cellsBreast cancerAdvanced triple-negative breast cancer (TNBC)ChemotherapypaclitaxelprePlasma cells0.3090521.21e-02

GSE169246_PacBlood

patientsPeripheral blood mononuclear cellsBreast cancerAdvanced triple-negative breast cancer (TNBC)ChemotherapypaclitaxelpreCD4+ T cells0.2614890.00e+00

GSE169246_PacBlood

patientsPeripheral blood mononuclear cellsBreast cancerAdvanced triple-negative breast cancer (TNBC)ChemotherapypaclitaxelpreCD8+ T cells0.280970.00e+00

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Expression of KCNA3 in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to KCNA3

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.

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MicroRNAs (miRNA) regulating KCNA3

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
KCNA3hsa-miR-6882-5p91.6324NM_002232
KCNA3hsa-miR-4790-3p88.978NM_002232
KCNA3hsa-miR-1211985.4156NM_002232
KCNA3hsa-miR-6769b-5p85.0294NM_002232
KCNA3hsa-miR-95-5p85.0153NM_002232
KCNA3hsa-miR-211-5p84.7071NM_002232
KCNA3hsa-miR-204-5p84.7071NM_002232
KCNA3hsa-miR-449783.1041NM_002232
KCNA3hsa-miR-509382.6244NM_002232
KCNA3hsa-miR-6769a-5p80.4174NM_002232
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Motifs and transcription factors (TFs) regulating KCNA3

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
KCNA3flyfactorsurvey__Mad_FlyReg_FBgn0011648SMAD9 (inferredBy_Orthology).
KCNA3hdpi__NRLNRL (directAnnotation).
KCNA3transfac_pro__M07310SP5 (directAnnotation).
KCNA3cisbp__M07938E2F1 (directAnnotation).
KCNA3transfac_pro__M02933ZBTB14 (inferredBy_Orthology).
KCNA3cisbp__M00968MTF2 (directAnnotation).
KCNA3taipale_cyt_meth__E2F2_NCGCGCGCGCM_eDBD_methE2F2 (directAnnotation).
KCNA3transfac_pro__M04817ZBTB33 (directAnnotation).
KCNA3taipale_tf_pairs__ETV5_HES7_NNCACGTGNNNNCCGGAANN_CAPETV5; HES7 (directAnnotation).
KCNA3metacluster_67.2ZNF501 (directAnnotation). ACAA1; E2F2; E2F2; E2F3; E2F3; FOXN4 (inferredBy_Orthology).
KCNA3tfdimers__MD00483ZBTB14 (directAnnotation).
KCNA3metacluster_151.1KAT7; PML; SMAD5; TAF1; ZFP37; ZGPAT; ZNF519; ZNF519; ZNF571; ZNF770; ZNF770; ZNF770; ZSCAN22; ZSCAN22 (directAnnotation).
KCNA3transfac_pro__M02089E2F3 (directAnnotation).
KCNA3transfac_pro__M07317CTBP1 (directAnnotation).
KCNA3transfac_pro__M12697ZNF142 (directAnnotation).
KCNA3transfac_pro__M00716ZBTB14 (directAnnotation).
KCNA3taipale_tf_pairs__TFAP2C_E2F8_NNTCCCGCNNNCCNNNGGC_CAP_reprE2F8; TFAP2C (directAnnotation).
KCNA3transfac_pro__M03806ZBTB7C (directAnnotation).
KCNA3transfac_pro__M01090SMAD9 (inferredBy_Orthology).
KCNA3transfac_pro__M04893TAF1 (directAnnotation).
KCNA3transfac_pro__M01253CNOT3 (directAnnotation).
KCNA3jaspar__MA0535.1SMAD9 (inferredBy_Orthology).
KCNA3transfac_pro__M00803E2F1; E2F3; E2F4; TFDP1 (directAnnotation).
KCNA3transfac_pro__M04916TAF1 (directAnnotation).
KCNA3kznf__ZNF548_Imbeault2017_RP_RCADEZNF548 (directAnnotation).
KCNA3idmmpmm__MadSMAD9 (inferredBy_Orthology).
KCNA3hdpi__RARARARA (directAnnotation).
KCNA3hdpi__HTATIP2HTATIP2 (directAnnotation).
KCNA3jaspar__MA1650.1ZBTB14 (directAnnotation).
KCNA3taipale_tf_pairs__E2F1_ELK1_SGCGCNNNNNNNNNNCGGAAGN_CAP_reprE2F1; ELK1 (directAnnotation).
KCNA3hdpi__HIP2UBE2K (directAnnotation).
KCNA3transfac_pro__M01240GTF2IRD1 (directAnnotation).
KCNA3hdpi__ZNF304ZNF304 (directAnnotation).
KCNA3dbtfbs__ZBTB8A_HEK293_ENCSR481FEC_merged_N1ZBTB8A (directAnnotation).
KCNA3cisbp__M08228PAX5 (directAnnotation).
KCNA3transfac_pro__M01088DEAF1 (inferredBy_Orthology).
KCNA3transfac_pro__M00938E2F1 (directAnnotation).
KCNA3kznf__ZNF100_Imbeault2017_RP_RCADEZNF100 (directAnnotation).
KCNA3metacluster_24.1HIC1; HIC1; ZNF816; ZNF816; ZNF816; ZXDC (directAnnotation).
KCNA3transfac_pro__M00800TFAP2A; TFAP2B; TFAP2C (directAnnotation).
KCNA3kznf__ZNF267_Imbeault2017_RP_RCADEZNF267 (directAnnotation).
KCNA3metacluster_15.1E2F4; E2F4; E2F4; E2F4; E2F7; ZFP69B (directAnnotation). E2F4 (inferredBy_Orthology).
KCNA3cisbp__M00788ZFY (inferredBy_Orthology).
KCNA3metacluster_24.3DIDO1; HINFP; ILF3; ZBTB21; ZFX; ZFX; ZNF283; ZNF37A; ZNF501; ZNF614 (directAnnotation). ZFY; ZFY (inferredBy_Orthology).
KCNA3taipale_tf_pairs__GCM1_SPDEF_RTGNKGGCGGAWG_CAP_reprGCM1; SPDEF (directAnnotation).
KCNA3metacluster_126.7CTCF; ZFY; ZSCAN30 (directAnnotation).
KCNA3transfac_pro__M02090E2F4 (directAnnotation).
KCNA3transfac_pro__M03846SMAD5 (directAnnotation).
KCNA3metacluster_45.4E2F2 (directAnnotation).
KCNA3transfac_pro__M00915TFAP2A; TFAP2B; TFAP2C (directAnnotation).
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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.

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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.
Target nameDrug nameDrug IDDrug type
KCNA3"Clofazimine"

DB00845

small molecule
KCNA3"Dalfampridine"

DB06637

small molecule
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1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."