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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene (This gene does not contain this module)

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor

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Acts as a drug target< (This gene does not contain this module)

Gene: IRF1

Summary for IRF1

Gene informationGene symbol

IRF1

Ensembl ID

ENSG00000125347

Entrez ID

3659

Gene nameinterferon regulatory factor 1
SynonymsMAR
Gene typeprotein_coding
UniProtAcc

NA


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Dataset with differentially expressed gene: IRF1

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE138267

CDXTumor tissueLung cancerSmall cell lung cancer (SCLC)ChemotherapyNANAMalignant cells0.4871250.00e+00

GSE131984_Pac

SUM159 cell lineCell lineBreast cancerTriple-negative breast cancer (TNBC)ChemotherapypaclitaxelNAMalignant cells-0.2591041.56e-11

GSE163836

FCIBC02 cell lineCell lineBreast cancerInflammatory breast cancerChemotherapypaclitaxelNAMalignant cells0.3793430.00e+00

GSE169246_PacTissue

patientsTumor tissueBreast cancerAdvanced triple-negative breast cancer (TNBC)ChemotherapypaclitaxelpostPlasma cells0.5232325.70e-09

GSE169246_PacTissue

patientsTumor tissueBreast cancerAdvanced triple-negative breast cancer (TNBC)ChemotherapypaclitaxelpreB cells0.2820111.05e-02

GSE169246_PacTissue

patientsTumor tissueBreast cancerAdvanced triple-negative breast cancer (TNBC)ChemotherapypaclitaxelpreMono/Macro0.2559321.29e-11

GSE169246_PacTissue

patientsTumor tissueBreast cancerAdvanced triple-negative breast cancer (TNBC)ChemotherapypaclitaxelpreCD8+ T cells0.3015353.09e-28

GSE169246_PacTissue

patientsTumor tissueBreast cancerAdvanced triple-negative breast cancer (TNBC)ChemotherapypaclitaxelprePlasma cells0.3586532.13e-05

GSE169246_PacAteBlood

patientsPeripheral blood mononuclear cellsBreast cancerAdvanced triple-negative breast cancer (TNBC)Immunotherapyatezolizumab + paclitaxelpostMono/Macro-0.4058170.00e+00

GSE169246_PacAteTissue

patientsTumor tissueBreast cancerAdvanced triple-negative breast cancer (TNBC)Immunotherapyatezolizumab + paclitaxelpostB cells0.25681.16e-06

GSE169246_PacAteTissue

patientsTumor tissueBreast cancerAdvanced triple-negative breast cancer (TNBC)Immunotherapyatezolizumab + paclitaxelpostCD4+ T cells0.3434610.00e+00

GSE169246_PacAteTissue

patientsTumor tissueBreast cancerAdvanced triple-negative breast cancer (TNBC)Immunotherapyatezolizumab + paclitaxelpreMono/Macro-0.3918221.67e-24

GSE169246_PacAteTissue

patientsTumor tissueBreast cancerAdvanced triple-negative breast cancer (TNBC)Immunotherapyatezolizumab + paclitaxelpreB cells-0.2562811.40e-02

GSE197268_Axi-cel

patientsPeripheral blood mononuclear cellsAcute lymphoblastic leukemiaLarge B-cell acute lymphoblastic leukemia (B-ALL)Immunotherapyaxi-cel (CAR-T)postProgenitors1.065671.86e-04

GSE197268_Axi-cel

patientsPeripheral blood mononuclear cellsAcute lymphoblastic leukemiaLarge B-cell acute lymphoblastic leukemia (B-ALL)Immunotherapyaxi-cel (CAR-T)postMono/Macro-0.4623790.00e+00

PMID34715028

patientsTumor tissueKidney cancerClear cell renal cell carcinoma (ccRCC)ImmunotherapynivolumabpostCD4+ T cells-1.016650.00e+00

PMID34715028

patientsTumor tissueKidney cancerClear cell renal cell carcinoma (ccRCC)ImmunotherapynivolumabpostCD8+ T cells-0.7147240.00e+00

GSE164237

patientsPeripheral blood mononuclear cellsMelanomaAdvanced stages of melanoma ImmunotherapypembrolizumabpreCD8+ T cells-0.2916621.96e-44

GSE150930

patientsPeripheral blood mononuclear cellsChronic lymphocytic leukemiaMucosa-assisted lymphoid tissue (MALT) lymphomaImmunotherapyrituximab + cyclophosphamide + fludarabineNAMalignant cells0.3479891.97e-10

GSE207422_Sin

patientsTumor tissueLung cancerEGFR/ALK mutation negative non-small cell lung cancer (NSCLC)Immunotherapysintilimab + carboplatin + (docetaxel or pemetrexed or emcitabine)postCD8+ T cells0.4621592.83e-16

GSE207422_Sin

patientsTumor tissueLung cancerEGFR/ALK mutation negative non-small cell lung cancer (NSCLC)Immunotherapysintilimab + carboplatin + (docetaxel or pemetrexed or emcitabine)postCD4+ T cells0.333028.93e-08

GSE197268_Tisa-cel

patientsPeripheral blood mononuclear cellsAcute lymphoblastic leukemiaLarge B-cell acute lymphoblastic leukemia (B-ALL)Immunotherapytisa-cel (CAR-T)postCD8+ T cells0.2665280.00e+00

GSE207422_Tor

patientsTumor tissueLung cancerEGFR/ALK mutation negative non-small cell lung cancer (NSCLC)Immunotherapytoripalimab + carboplatin + (docetaxel or pemetrexed or emcitabine)postMalignant cells-0.295921.64e-03

GSE207422_Tor

patientsTumor tissueLung cancerEGFR/ALK mutation negative non-small cell lung cancer (NSCLC)Immunotherapytoripalimab + carboplatin + (docetaxel or pemetrexed or emcitabine)postNeutrophils0.8414959.12e-22

GSE189460

patientsBone marrow aspirateMultiple myelomaMultiple myeloma (MM)Targeted therapybortezomib + melphalan + prednisolonepreMalignant cells0.4261990.00e+00

GSE189460

patientsBone marrow aspirateMultiple myelomaMultiple myeloma (MM)Targeted therapybortezomib + melphalan + prednisolonepreMono/Macro0.2909241.91e-23

GSE161801_PI

patientsBone marrow aspirateMultiple myelomaRefractory multiple myeloma (MM)Targeted therapycarfilzomib + dexamethasonepostCD8+ T cells-0.3003926.01e-43

GSE161801_PI

patientsBone marrow aspirateMultiple myelomaRefractory multiple myeloma (MM)Targeted therapycarfilzomib + dexamethasonepostNK cells-0.4141795.98e-19

GSE161801_PI

patientsBone marrow aspirateMultiple myelomaRefractory multiple myeloma (MM)Targeted therapycarfilzomib + dexamethasonepreMalignant cells-0.6231743.47e-36

GSE139386

H3122 cell lineCell lineLung cancerEML4-ALK fusion-positive non-small cell lung cancer (NSCLC)Targeted therapyceritinibNAMalignant cells0.306930.00e+00

GSE162117

patientsPeripheral blood mononuclear cellsAcute myeloid leukemiaTefractory acute myeloid leukemia (AML)Targeted therapyficlatuzumabpostMalignant cells-0.4662810.00e+00

GSE162117

patientsPeripheral blood mononuclear cellsAcute myeloid leukemiaTefractory acute myeloid leukemia (AML)Targeted therapyficlatuzumabpostcDCs-0.2721757.31e-06

GSE162117

patientsPeripheral blood mononuclear cellsAcute myeloid leukemiaTefractory acute myeloid leukemia (AML)Targeted therapyficlatuzumabpreMalignant cells-0.3502180.00e+00

GSE199333

patientsBone marrow aspirateAcute myeloid leukemiaPrimary FLT3-ITD-mutated acute myeloid leukemia (AML)Targeted therapygilteritinibpostCD8+ T cells-0.2602544.94e-27

GSE199333

patientsBone marrow aspirateAcute myeloid leukemiaPrimary FLT3-ITD-mutated acute myeloid leukemia (AML)Targeted therapygilteritinibpreErythrocytes-0.594517.51e-30

GSE199333

patientsBone marrow aspirateAcute myeloid leukemiaPrimary FLT3-ITD-mutated acute myeloid leukemia (AML)Targeted therapygilteritinibpreMalignant cells-0.6366440.00e+00

GSE199333

patientsBone marrow aspirateAcute myeloid leukemiaPrimary FLT3-ITD-mutated acute myeloid leukemia (AML)Targeted therapygilteritinibpreB cells-1.131482.31e-04

GSE111014

patientsPeripheral blood mononuclear cellsChronic lymphocytic leukemiaChronic lymphocytic leukemia (CLL)Targeted therapyibrutinibpreCD8+ T cells-0.4350965.87e-10

GSE131984_JQ1

SUM159 cell lineCell lineBreast cancerTriple-negative breast cancer (TNBC)Targeted therapyJQ1NAMalignant cells-0.4220191.02e-35

GSE131984_JQ1Pac

SUM159 cell lineCell lineBreast cancerTriple-negative breast cancer (TNBC)Targeted therapyJQ1 + paclitaxelNAMalignant cells-0.389645.24e-16

GSE131984_JQ1Pal

SUM159 cell lineCell lineBreast cancerTriple-negative breast cancer (TNBC)Targeted therapyJQ1 + palbociclibNAMalignant cells-0.4635892.49e-33

GSE161801_IMiD

patientsBone marrow aspirateMultiple myelomaRefractory multiple myeloma (MM)Targeted therapypomalidomide + dexamethasone OR lenalidomide + dexamethasonepreNK cells-0.2887353.39e-13

GSE161801_IMiD

patientsBone marrow aspirateMultiple myelomaRefractory multiple myeloma (MM)Targeted therapypomalidomide + dexamethasone OR lenalidomide + dexamethasonepreCD8+ T cells-0.283786.44e-29

GSE161801_IMiD

patientsBone marrow aspirateMultiple myelomaRefractory multiple myeloma (MM)Targeted therapypomalidomide + dexamethasone OR lenalidomide + dexamethasonepreB cells-0.2578992.05e-06

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Expression of IRF1 in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to IRF1

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.

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MicroRNAs (miRNA) regulating IRF1

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
IRF1hsa-miR-4671-3p97.8075NM_002198
IRF1hsa-miR-454-3p96.1365NM_002198
IRF1hsa-miR-130a-3p93.7577NM_002198
IRF1hsa-miR-130b-3p93.7577NM_002198
IRF1hsa-miR-301a-3p93.7577NM_002198
IRF1hsa-miR-429593.7577NM_002198
IRF1hsa-miR-366693.7577NM_002198
IRF1hsa-miR-301b-3p93.7577NM_002198
IRF1hsa-miR-653-3p90.4703NM_002198
IRF1hsa-miR-1292-5p90.0789NM_002198
IRF1hsa-miR-106a-5p88.8117NM_002198
IRF1hsa-miR-20a-5p88.8117NM_002198
IRF1hsa-miR-106b-5p88.8117NM_002198
IRF1hsa-miR-526b-3p88.8117NM_002198
IRF1hsa-miR-93-5p88.538NM_002198
IRF1hsa-miR-20b-5p88.538NM_002198
IRF1hsa-miR-17-5p88.538NM_002198
IRF1hsa-miR-519d-3p88.538NM_002198
IRF1hsa-miR-1213688.0497NM_002198
IRF1hsa-miR-7151-3p85.4427NM_002198
IRF1hsa-miR-6791-5p83.6994NM_002198
IRF1hsa-miR-429283.6994NM_002198
IRF1hsa-miR-383-5p83.3492NM_002198
IRF1hsa-miR-58782.9799NM_002198
IRF1hsa-miR-6778-3p82.4207NM_002198
IRF1hsa-miR-6802-3p81.9846NM_002198
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Motifs and transcription factors (TFs) regulating IRF1

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
IRF1metacluster_3.11SP1; SP1; SP2; SP3; SP3; SP4 (directAnnotation).
IRF1homer__GGGGGGGG_MazMAZ (directAnnotation).
IRF1metacluster_3.7SP1; SP1; SP1; SP1; SP1; SP1; SP1; SP1; SP2; SP2; SP2; SP2; SP3; SP3; SP3; SP4; SP4; SP4; SP4; SP4; SP4; SP5 (directAnnotation).
IRF1transfac_pro__M01714KLF15 (directAnnotation).
IRF1transfac_pro__M02281SP1 (directAnnotation).
IRF1transfac_pro__M07461KLF1; KLF10; KLF11; KLF12; KLF13; KLF15; KLF16; KLF17; KLF2; KLF3; KLF4; KLF5; KLF6; KLF7; KLF8; KLF9 (directAnnotation).
IRF1transfac_pro__M05788ZNF569 (inferredBy_Orthology).
IRF1metacluster_52.11ZNF184 (directAnnotation).
IRF1kznf__CTCF_Rhee2011.3_ChIP-exoCTCF (directAnnotation).
IRF1taipale__ELK1_full_NACTTCCGSCGGAARMN_reprELK1 (directAnnotation).
IRF1tfdimers__MD00143IKZF1; MZF1 (directAnnotation).
IRF1transfac_pro__M05935ZNF382 (directAnnotation).
IRF1taipale_tf_pairs__POU2F1_ELK1_NCCGGATATGCAN_CAPELK1; POU2F1 (directAnnotation).
IRF1transfac_pro__M05910ZNF335 (directAnnotation).
IRF1taipale_tf_pairs__GCM2_DLX2_RTRCGGGNNNNNTAATTR_CAP_reprDLX2; GCM2 (directAnnotation).
IRF1transfac_pro__M06248ZNF91 (directAnnotation).
IRF1metacluster_172.6CHD2; E2F1 (directAnnotation).
IRF1metacluster_30.4BACH1; BACH1; MAFG; MAFG; NFE2; NFE2; NFE2L1; NFE2L1; NFE2L2 (directAnnotation).
IRF1swissregulon__hs__HSF2HSF2 (directAnnotation).
IRF1transfac_pro__M06763ZNF225 (directAnnotation).
IRF1metacluster_52.5HSFY1; HSFY1; HSFY1; HSFY2; HSFY2; HSFY2 (directAnnotation).
IRF1metacluster_22.25NFE2L2 (directAnnotation).
IRF1transfac_pro__M01251E2F1 (directAnnotation).
IRF1metacluster_70.5POU3F3 (directAnnotation).
IRF1metacluster_22.29NFE2 (directAnnotation).
IRF1transfac_pro__M06530ZNF596 (directAnnotation).
IRF1metacluster_143.1ZSCAN31 (directAnnotation).
IRF1metacluster_22.11NFE2 (directAnnotation).
IRF1taipale_tf_pairs__HOXC10_EOMES_TMACACYYMRTWAA_CAPEOMES; HOXC10 (directAnnotation).
IRF1metacluster_130.9ZNF569 (directAnnotation). ZNF569 (inferredBy_Orthology).
IRF1taipale_tf_pairs__TEAD4_ELK1_RGAATSCGGAAGYN_CAPELK1; TEAD4 (directAnnotation).
IRF1tfdimers__MD00478SOX10; ZNF217 (directAnnotation).
IRF1transfac_pro__M05721ZNF235 (directAnnotation).
IRF1kznf__ZKSCAN2_Imbeault2017_OM_RCADEZKSCAN2 (directAnnotation).
IRF1kznf__ZNF613_Imbeault2017_RP_RCADEZNF613 (directAnnotation).
IRF1transfac_pro__M06811ZNF528 (directAnnotation).
IRF1jaspar__MA1125.1ZNF384 (directAnnotation).
IRF1transfac_pro__M05887ZNF837 (directAnnotation).
IRF1transfac_pro__M02850ELF3 (inferredBy_Orthology).
IRF1tfdimers__MD00076HNF1A; HNF1B; PPARG (directAnnotation).
IRF1transfac_pro__M06342ZNF329 (inferredBy_Orthology).
IRF1taipale_tf_pairs__HOXD12_ELK3_RSCGGAAGTAATAAAN_CAPELK3; HOXD12 (directAnnotation).
IRF1transfac_pro__M04944GABPA (directAnnotation).
IRF1taipale_tf_pairs__GCM1_ETV4_RTGCGGGCGGAAGTR_CAPETV4; GCM1 (directAnnotation).
IRF1transfac_pro__M05711ZNF37A (directAnnotation).
IRF1kznf__ZNF77_Imbeault2017_OM_MEMEZNF77 (directAnnotation).
IRF1transfac_pro__M02113POU2AF1 (directAnnotation).
IRF1metacluster_85.8ZSCAN4 (directAnnotation).
IRF1metacluster_174.7BARHL2 (directAnnotation).
IRF1tfdimers__MD00339HMGA1; HMGA2; TFAP2C (directAnnotation).
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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.
TFmotifExpressionCell typeDatasetTimepoint
IRF1tfdimers__MD00527downCD8+ T cells

GSE111014

pre
IRF1metacluster_2.7downMalignant cells

GSE131984_Pac

NA
IRF1metacluster_2.7upMalignant cells

GSE150930

NA
IRF1tfdimers__MD00527upMalignant cells

GSE150930

NA
IRF1tfdimers__MD00527downB cells

GSE161801_IMiD

pre
IRF1tfdimers__MD00138downB cells

GSE161801_IMiD

pre
IRF1tfdimers__MD00414downNK cells

GSE161801_IMiD

pre
IRF1metacluster_2.6downNK cells

GSE161801_IMiD

pre
IRF1tfdimers__MD00138downCD8+ T cells

GSE161801_PI

post
IRF1tfdimers__MD00414downNK cells

GSE161801_PI

post
IRF1tfdimers__MD00208downMalignant cells

GSE161801_PI

pre
IRF1tfdimers__MD00138downMalignant cells

GSE161801_PI

pre
IRF1tfdimers__MD00527downcDCs

GSE162117

post
IRF1tfdimers__MD00138downCD8+ T cells

GSE164237

pre
IRF1tfdimers__MD00527downCD8+ T cells

GSE164237

pre
IRF1tfdimers__MD00342downCD8+ T cells

GSE164237

pre
IRF1tfdimers__MD00026upB cells

GSE169246_PacAteTissue

post
IRF1metacluster_2.7upB cells

GSE169246_PacAteTissue

post
IRF1metacluster_2.6upB cells

GSE169246_PacAteTissue

post
IRF1tfdimers__MD00026upCD4+ T cells

GSE169246_PacAteTissue

post
IRF1metacluster_2.7upCD4+ T cells

GSE169246_PacAteTissue

post
IRF1metacluster_2.6downMono/Macro

GSE169246_PacAteTissue

pre
IRF1tfdimers__MD00138upPlasma cells

GSE169246_PacTissue

post
IRF1tfdimers__MD00527upPlasma cells

GSE169246_PacTissue

post
IRF1tfdimers__MD00342upPlasma cells

GSE169246_PacTissue

post
IRF1tfdimers__MD00208upMono/Macro

GSE169246_PacTissue

pre
IRF1metacluster_2.7upPlasma cells

GSE169246_PacTissue

pre
IRF1metacluster_2.6upPlasma cells

GSE169246_PacTissue

pre
IRF1tfdimers__MD00342upMono/Macro

GSE189460

pre
IRF1metacluster_2.6downMono/Macro

GSE197268_Axi-cel

post
IRF1tfdimers__MD00208downMono/Macro

GSE197268_Axi-cel

post
IRF1tfdimers__MD00527downMono/Macro

GSE197268_Axi-cel

post
IRF1metacluster_2.7downMono/Macro

GSE197268_Axi-cel

post
IRF1tfdimers__MD00138downMono/Macro

GSE197268_Axi-cel

post
IRF1tfdimers__MD00440upProgenitors

GSE197268_Axi-cel

post
IRF1tfdimers__MD00489upProgenitors

GSE197268_Axi-cel

post
IRF1tfdimers__MD00138upProgenitors

GSE197268_Axi-cel

post
IRF1tfdimers__MD00342upProgenitors

GSE197268_Axi-cel

post
IRF1tfdimers__MD00527upProgenitors

GSE197268_Axi-cel

post
IRF1metacluster_2.6upCD8+ T cells

GSE197268_Tisa-cel

post
IRF1tfdimers__MD00208downCD8+ T cells

GSE199333

post
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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.



1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."