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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene (This gene does not contain this module)

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor (This gene does not contain this module)

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Acts as a drug target

Gene: HNMT

Summary for HNMT

Gene informationGene symbol

HNMT

Ensembl ID

ENSG00000150540

Entrez ID

3176

Gene namehistamine N-methyltransferase
SynonymsNA
Gene typeprotein_coding
UniProtAcc

P50135


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Dataset with differentially expressed gene: HNMT

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE169246_PacTissue

patientsTumor tissueBreast cancerAdvanced triple-negative breast cancer (TNBC)ChemotherapypaclitaxelpreMono/Macro0.3024342.98e-29

GSE175716

PDXTumor tissueLiver cancerAdvanced hepatocellular carcinomaTargeted therapysorafenibNAMalignant cells-0.6274760.00e+00

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Expression of HNMT in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to HNMT

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.

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MicroRNAs (miRNA) regulating HNMT

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
HNMThsa-miR-186-5p99.0742NM_006895
HNMThsa-miR-477597.0753NM_006895
HNMThsa-miR-433-3p96.9974NM_001024075
HNMThsa-miR-3065-5p95.6616NM_001024075
HNMThsa-miR-126-5p95.1045NM_006895
HNMThsa-miR-7159-5p93.882NM_001024075
HNMThsa-miR-494-3p93.0948NM_006895
HNMThsa-miR-590-3p93.0771NM_006895
HNMThsa-miR-374a-5p92.8681NM_006895
HNMThsa-miR-374b-5p92.2341NM_006895
HNMThsa-miR-94490.8045NM_006895
HNMThsa-miR-4795-3p90.6136NM_006895
HNMThsa-miR-374c-3p88.6763NM_006895
HNMThsa-miR-6508-5p88.5573NM_006895
HNMThsa-miR-806788.0537NM_006895
HNMThsa-miR-391788.0267NM_001024074
HNMThsa-miR-316887.8635NM_006895
HNMThsa-miR-5583-3p86.9242NM_006895
HNMThsa-miR-3190-5p86.7268NM_001024074
HNMThsa-miR-478085.5231NM_006895
HNMThsa-miR-3688-3p85.4926NM_006895
HNMThsa-miR-1255a85.2281NM_006895
HNMThsa-miR-1255b-5p85.2281NM_006895
HNMThsa-miR-6873-3p85.0369NM_006895
HNMThsa-miR-807084.0698NM_006895
HNMThsa-miR-1252-3p83.8506NM_006895
HNMThsa-miR-120683.6039NM_001024075
HNMThsa-miR-6833-3p83.4654NM_006895
HNMThsa-miR-124-5p83.0338NM_006895
HNMThsa-miR-676-5p82.8336NM_001024075
HNMThsa-miR-6770-5p82.8168NM_006895
HNMThsa-miR-361581.8789NM_001024074
HNMThsa-miR-579-3p81.8515NM_006895
HNMThsa-miR-664b-3p81.8515NM_006895
HNMThsa-miR-451781.7927NM_006895
HNMThsa-miR-3064-5p81.6159NM_006895
HNMThsa-miR-6504-5p81.6159NM_006895
HNMThsa-miR-3085-3p81.6159NM_006895
HNMThsa-miR-451981.2286NM_001024075
HNMThsa-miR-4768-5p80.6811NM_006895
HNMThsa-miR-323a-3p80.4598NM_001024075
HNMThsa-miR-1252-5p80.031NM_006895
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Motifs and transcription factors (TFs) regulating HNMT

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
HNMTtransfac_pro__M05418ZNF521 (directAnnotation).
HNMTmetacluster_21.5HOXB2; HSF1; HSF1; HSF1; HSF1; HSF1; HSF1; HSF1; HSF1; HSF2; HSF2; HSF2; HSF2; HSF2; HSF2; HSF4; HSF4; HSF4 (directAnnotation). HSF1; HSF1; HSF1; HSF1; HSF1; HSF1; HSF1; HSF2; HSF2; HSF2; HSF2; HSF4; HSF4; HSF4; HSF4; HSF5; HSF5; HSF5; HSF5; HSFX1; HSFX1; HSFX1; HSFX1; HSFX2; HSFX2; HSFX2; HSFX2; HSFX3; HSFX3; HSFX3; HSFX3; HSFX4; HSFX4; HSFX4; HSFX4; HSFY1; HSFY1; HSFY1; HSFY1; HSFY2; HSFY2; HSFY2; HSFY2 (inferredBy_Orthology).
HNMTmetacluster_22.29NFE2 (directAnnotation).
HNMTmetacluster_22.17NFE2 (directAnnotation).
HNMTtfdimers__MD00208IRF1; LTF (directAnnotation).
HNMTmetacluster_22.25NFE2L2 (directAnnotation).
HNMTmetacluster_22.18BACH2 (inferredBy_Orthology).
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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.

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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.
Target nameDrug nameDrug IDDrug type
HNMT"Amodiaquine"

DB00613

small molecule
HNMT"Harmaline"

DB13875

small molecule
HNMT"Metoprine"

DB04655

small molecule
HNMT"S-adenosyl-L-homocysteine"

DB01752

small molecule
HNMT"SKF-91488"

DB07106

small molecule
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1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."