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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor

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Acts as a drug target< (This gene does not contain this module)

Gene: GATA3

Summary for GATA3

Gene informationGene symbol

GATA3

Ensembl ID

ENSG00000107485

Entrez ID

2625

Gene nameGATA binding protein 3
SynonymsHDR
Gene typeprotein_coding
UniProtAcc

NA


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Dataset with differentially expressed gene: GATA3

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE169246_PacAteTissue

patientsTumor tissueBreast cancerAdvanced triple-negative breast cancer (TNBC)Immunotherapyatezolizumab + paclitaxelpreCD4+ T cells0.3457940.00e+00

GSE197268_Axi-cel

patientsPeripheral blood mononuclear cellsAcute lymphoblastic leukemiaLarge B-cell acute lymphoblastic leukemia (B-ALL)Immunotherapyaxi-cel (CAR-T)postCD8+ T cells-0.3421150.00e+00

PMID34715028

patientsTumor tissueKidney cancerClear cell renal cell carcinoma (ccRCC)ImmunotherapynivolumabpostCD8+ T cells-0.4894560.00e+00

GSE111014

patientsPeripheral blood mononuclear cellsChronic lymphocytic leukemiaChronic lymphocytic leukemia (CLL)Targeted therapyibrutinibpreCD4+ T cells-0.2914822.52e-04

GSE115251

Kelly cell lineCell lineNeuroblastomaNeuroblastomaTargeted therapyTAE684NAMalignant cells-0.9322220.00e+00

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Expression of GATA3 in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to GATA3

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.
Gene symbolMechanism

GATA3

Regulation by the Disease Microenvironment
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MicroRNAs (miRNA) regulating GATA3

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
GATA3hsa-miR-4742-3p97.431NM_001002295
GATA3hsa-miR-4795-3p95.7809NM_002051
GATA3hsa-miR-5692b94.4688NM_002051
GATA3hsa-miR-5692c94.4688NM_002051
GATA3hsa-miR-3121-5p94.3463NM_002051
GATA3hsa-miR-427294.0204NM_001002295
GATA3hsa-miR-627-3p92.6407NM_002051
GATA3hsa-let-7b-3p91.9022NM_001002295
GATA3hsa-let-7f-1-3p91.9022NM_001002295
GATA3hsa-miR-98-3p91.9022NM_001002295
GATA3hsa-let-7a-3p91.9022NM_001002295
GATA3hsa-miR-4659a-3p91.5257NM_001002295
GATA3hsa-miR-4659b-3p91.5257NM_001002295
GATA3hsa-miR-5001-3p91.4516NM_001002295
GATA3hsa-miR-510-3p90.7452NM_001002295
GATA3hsa-miR-3912-5p90.1307NM_001002295
GATA3hsa-miR-447089.7719NM_001002295
GATA3hsa-miR-338-5p89.7292NM_002051
GATA3hsa-miR-27a-3p89.2481NM_001002295
GATA3hsa-miR-27b-3p89.2481NM_001002295
GATA3hsa-miR-513a-5p89.2481NM_001002295
GATA3hsa-miR-998589.2481NM_001002295
GATA3hsa-miR-374a-5p88.7008NM_002051
GATA3hsa-miR-197688.5745NM_001002295
GATA3hsa-miR-127288.4458NM_002051
GATA3hsa-miR-374b-5p87.9818NM_002051
GATA3hsa-miR-6868-5p86.4699NM_001002295
GATA3hsa-miR-6738-3p86.2978NM_001002295
GATA3hsa-miR-495-3p85.7357NM_001002295
GATA3hsa-miR-568885.7357NM_001002295
GATA3hsa-miR-499a-5p85.1259NM_001002295
GATA3hsa-miR-1252-5p84.9159NM_002051
GATA3hsa-miR-427684.3643NM_001002295
GATA3hsa-miR-4789-5p84.2976NM_001002295
GATA3hsa-let-7f-2-3p84.2976NM_001002295
GATA3hsa-miR-1185-2-3p84.2976NM_001002295
GATA3hsa-miR-1185-1-3p84.2976NM_001002295
GATA3hsa-miR-3688-5p84.0822NM_001002295
GATA3hsa-miR-3529-3p83.8254NM_002051
GATA3hsa-miR-1212383.3943NM_001002295
GATA3hsa-miR-144-3p82.6287NM_002051
GATA3hsa-miR-451781.9492NM_002051
GATA3hsa-miR-444881.7916NM_001002295
GATA3hsa-miR-60081.1503NM_001002295
GATA3hsa-miR-629-3p80.4843NM_002051
GATA3hsa-miR-570480.0048NM_002051
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Motifs and transcription factors (TFs) regulating GATA3

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
GATA3hdpi__NFIXNFIX (directAnnotation).
GATA3transfac_pro__M03813POU3F3 (directAnnotation).
GATA3hocomoco__MNX1_HUMAN.H11MO.0.DMNX1 (directAnnotation).
GATA3hdpi__ZNF193ZSCAN9 (directAnnotation).
GATA3hdpi__FOXM1FOXM1 (directAnnotation).
GATA3transfac_pro__M02843BBX (inferredBy_Orthology).
GATA3hdpi__FLI1FLI1 (directAnnotation).
GATA3taipale_tf_pairs__ARNTL_PITX1_NNCACGTGNNNNRGMTTAN_CAP_reprARNTL; PITX1 (directAnnotation).
GATA3metacluster_44.13NKX3-1; NKX3-2 (directAnnotation).
GATA3transfac_pro__M05892ZNF768 (inferredBy_Orthology).
GATA3transfac_pro__M06213ZNF267 (directAnnotation).
GATA3cisbp__M01816JUN (inferredBy_Orthology).
GATA3taipale_cyt_meth__ZNF385D_NCGTCGCGACGN_eDBD_reprZNF385D (directAnnotation).
GATA3transfac_pro__M06733RBAK (directAnnotation).
GATA3transfac_pro__M05352ZNF692 (inferredBy_Orthology).
GATA3homer__TAATCCCN_Pitx1PITX1 (inferredBy_Orthology).
GATA3hocomoco__FOXJ3_HUMAN.H11MO.1.BFOXJ3 (directAnnotation).
GATA3metacluster_111.5E4F1; E4F1 (directAnnotation).
GATA3taipale__IRF7_DBD_RAANCGAAAWTCGNTTY_reprIRF7 (directAnnotation).
GATA3metacluster_92.4ZNF33B (directAnnotation).
GATA3tfdimers__MD00035MZF1; STAT6 (directAnnotation).
GATA3taipale_tf_pairs__HOXD12_ELK3_RSCGGAAGTAATAAAN_CAPELK3; HOXD12 (directAnnotation).
GATA3transfac_pro__M12355ZNF549 (directAnnotation).
GATA3metacluster_72.1ZNF423; ZNF423 (directAnnotation).
GATA3taipale_tf_pairs__FOXJ2_ELF1_RMAGAAAACCGAANN_CAP_reprELF1; FOXJ2 (directAnnotation).
GATA3taipale_tf_pairs__FOXO1_ELF1_NNGAAAACCGAANM_CAPELF1; FOXO1 (directAnnotation).
GATA3taipale_tf_pairs__PITX1_EOMES_GGATTANNARGTGTKN_CAP_reprEOMES; PITX1 (directAnnotation).
GATA3hdpi__ZNF124ZNF124 (directAnnotation).
GATA3transfac_public__M00106CUX1 (directAnnotation).
GATA3metacluster_2.6IRF1; IRF1; IRF1; IRF1; IRF1; IRF1; IRF1; IRF1; IRF1; IRF1; IRF2; IRF2; IRF2; IRF2; IRF2; IRF2; IRF2; IRF3; IRF3; IRF3; IRF3; IRF3; IRF3; IRF4; IRF4; IRF4; IRF4; IRF4; IRF5; IRF5; IRF5; IRF5; IRF5; IRF5; IRF5; IRF6; IRF7; IRF7; IRF7; IRF7; IRF7; IRF7; IRF7; IRF8; IRF8; IRF8; IRF8; IRF8; IRF8; IRF8; IRF8; IRF9; IRF9; IRF9; IRF9; IRF9; IRF9; IRF9; STAT1; STAT2; STAT2; STAT2; STAT2; ZNF426; ZNF71 (directAnnotation). IRF1; IRF1; IRF3; IRF8 (inferredBy_Orthology).
GATA3metacluster_157.2ATF3; ATF3; ATF3; BACH1; BACH1; BACH1; BACH2; BACH2; BACH2; BACH2; BATF; BATF; BCL11A; FOS; FOS; FOS; FOS; FOS; FOS; FOSB; FOSL1; FOSL1; FOSL1; FOSL1; FOSL1; FOSL1; FOSL2; FOSL2; FOSL2; JDP2; JDP2; JDP2; JDP2; JDP2; JDP2; JDP2; JUN; JUN; JUN; JUN; JUN; JUNB; JUNB; JUNB; JUNB; JUNB; JUNB; JUND; JUND; JUND; JUND; JUND; JUND; JUND; JUND; JUND; MAF; MAFB; MAFF; MAFG; MAFK; NFE2; NFE2; NFE2; NFE2; NFE2; NFE2; NFE2L1; NFE2L1; NFE2L2; NFE2L3; ZNF3; ZSCAN5C (directAnnotation). FOSL1; JUN; JUN; JUN; JUNB; JUNB; JUND (inferredBy_Orthology).
GATA3metacluster_130.2ZNF182; ZNF22; ZNF225; ZNF225; ZNF285; ZNF362; ZNF362; ZNF384; ZNF487; ZNF512; ZNF570; ZNF613 (directAnnotation). ZNF384 (inferredBy_Orthology).
GATA3metacluster_130.3ZNF492; ZNF492 (directAnnotation). OVOL2; OVOL3; PEG3; PLAG1; PLAGL1; PLAGL2; REST; SCAND1; ZKSCAN2; ZNF131; ZNF174; ZNF18; ZNF202; ZNF274; ZNF444; ZNF446; ZNF496; ZNF518A; ZNF518B; ZNF576; ZNF641; ZNF770; ZSCAN1; ZSCAN18; ZSCAN29; ZSCAN32; ZSCAN5A; ZSCAN5B; ZSCAN5C (inferredBy_Orthology).
GATA3metacluster_5.1HIVEP1; HIVEP1; NFAT5; NFKB1; NFKB1; NFKB1; NFKB1; NFKB1; NFKB1; NFKB1; NFKB1; NFKB1; NFKB2; NFKB2; NFKB2; NFKB2; NFKB2; REL; REL; REL; RELA; RELA; RELA; RELA; RELA; RELA; RELA; RELA; RELA; RELA; RELA; RELA; RELA; RELA; RELA; RELA; RELA; RELA; RELA; RELA; RELA; RELA; RELB; RELB (directAnnotation). NFAT5; NFKB1; NFKB1; NFKB1; NFKB1; NFKB1; NFKB2; NFKB2; NFKB2; REL; REL; REL; REL; RELA; RELA; RELA; RELA; RELA; RELB; RELB; RELB (inferredBy_Orthology).
GATA3hdpi__LARP1LARP1 (directAnnotation).
GATA3transfac_pro__M01861ATF1 (directAnnotation).
GATA3hdpi__PDLIM5PDLIM5 (directAnnotation).
GATA3transfac_public__M00039CREB1 (directAnnotation).
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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.
TFmotifExpressionCell typeDatasetTimepoint
GATA3tfdimers__MD00187downCD4+ T cells

GSE111014

pre
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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.



1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."