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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene (This gene does not contain this module)

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor (This gene does not contain this module)

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Acts as a drug target< (This gene does not contain this module)

Gene: FGD6

Summary for FGD6

Gene informationGene symbol

FGD6

Ensembl ID

ENSG00000180263

Entrez ID

55785

Gene nameFYVE, RhoGEF and PH domain containing 6
SynonymsFLJ11183|ZFYVE24
Gene typeprotein_coding
UniProtAcc

Q6ZV73


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Dataset with differentially expressed gene: FGD6

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE175716

PDXTumor tissueLiver cancerAdvanced hepatocellular carcinomaTargeted therapysorafenibNAMalignant cells-0.4523050.00e+00

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Expression of FGD6 in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to FGD6

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.

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MicroRNAs (miRNA) regulating FGD6

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
FGD6hsa-miR-153-5p98.4869NM_018351
FGD6hsa-miR-432897.8792NM_018351
FGD6hsa-miR-1250-3p97.7621NM_018351
FGD6hsa-miR-144-3p96.5357NM_018351
FGD6hsa-miR-425696.1079NM_018351
FGD6hsa-miR-11181-5p96.1079NM_018351
FGD6hsa-miR-6866-5p95.412NM_018351
FGD6hsa-miR-6809-3p94.5373NM_018351
FGD6hsa-miR-5692a94.3935NM_018351
FGD6hsa-miR-34a-5p93.9505NM_018351
FGD6hsa-miR-449a93.9505NM_018351
FGD6hsa-miR-3145-3p93.7384NM_018351
FGD6hsa-miR-5590-3p93.6439NM_018351
FGD6hsa-miR-314393.0893NM_018351
FGD6hsa-miR-142-5p92.3621NM_018351
FGD6hsa-miR-449b-5p91.864NM_018351
FGD6hsa-miR-34c-5p91.864NM_018351
FGD6hsa-miR-4753-3p91.6129NM_018351
FGD6hsa-miR-366291.0041NM_018351
FGD6hsa-miR-480390.4081NM_018351
FGD6hsa-miR-548l90.3772NM_018351
FGD6hsa-miR-340-5p90.2876NM_018351
FGD6hsa-miR-548x-5p89.7765NM_018351
FGD6hsa-miR-548g-5p89.7765NM_018351
FGD6hsa-miR-548aj-5p89.7765NM_018351
FGD6hsa-miR-548f-5p89.7765NM_018351
FGD6hsa-miR-430289.5796NM_018351
FGD6hsa-miR-450089.4441NM_018351
FGD6hsa-miR-453388.6118NM_018351
FGD6hsa-miR-548au-3p86.8475NM_018351
FGD6hsa-miR-30d-5p86.7081NM_018351
FGD6hsa-miR-30c-5p86.7081NM_018351
FGD6hsa-miR-30a-5p86.7081NM_018351
FGD6hsa-miR-30e-5p86.7081NM_018351
FGD6hsa-miR-30b-5p86.7081NM_018351
FGD6hsa-miR-4722-3p85.4826NM_018351
FGD6hsa-miR-4760-5p85.0723NM_018351
FGD6hsa-miR-182785.0652NM_018351
FGD6hsa-miR-1233-3p84.5618NM_018351
FGD6hsa-miR-6727-3p84.528NM_018351
FGD6hsa-miR-548aj-3p84.434NM_018351
FGD6hsa-miR-548x-3p84.434NM_018351
FGD6hsa-miR-4713-3p84.1709NM_018351
FGD6hsa-miR-6876-5p84.0634NM_018351
FGD6hsa-let-7c-5p83.7738NM_018351
FGD6hsa-let-7b-5p83.7738NM_018351
FGD6hsa-let-7e-5p83.7738NM_018351
FGD6hsa-let-7f-5p83.7738NM_018351
FGD6hsa-let-7i-5p83.7738NM_018351
FGD6hsa-let-7a-5p83.7738NM_018351
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Motifs and transcription factors (TFs) regulating FGD6

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
FGD6metacluster_160.20JUND; PRDM15 (directAnnotation).
FGD6jaspar__MA0185.1DEAF1 (inferredBy_Orthology).
FGD6metacluster_61.1DEAF1; DEAF1 (directAnnotation).
FGD6kznf__ZNF213_Schmitges2016_RCADEZNF213 (directAnnotation).
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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.

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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.



1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."