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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor (This gene does not contain this module)

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Acts as a drug target

Gene: EPHB4

Summary for EPHB4

Gene informationGene symbol

EPHB4

Ensembl ID

ENSG00000196411

Entrez ID

2050

Gene nameEPH receptor B4
SynonymsHTK|Tyro11
Gene typeprotein_coding
UniProtAcc

NA


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Dataset with differentially expressed gene: EPHB4

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE131984_JQ1Pal

SUM159 cell lineCell lineBreast cancerTriple-negative breast cancer (TNBC)Targeted therapyJQ1 + palbociclibNAMalignant cells0.3308581.85e-23

GSE175716

PDXTumor tissueLiver cancerAdvanced hepatocellular carcinomaTargeted therapysorafenibNAMalignant cells0.3990368.95e-37

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Expression of EPHB4 in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to EPHB4

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.
Gene symbolMechanism

EPHB4

Unusual Activation of Pro-survival Pathway
Page: 1

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MicroRNAs (miRNA) regulating EPHB4

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
EPHB4hsa-miR-98-3p96.277NM_004444
EPHB4hsa-let-7b-3p95.9144NM_004444
EPHB4hsa-let-7a-3p95.9144NM_004444
EPHB4hsa-let-7f-1-3p95.9144NM_004444
EPHB4hsa-miR-6756-3p91.1784NM_004444
EPHB4hsa-miR-6825-5p88.8796NM_004444
EPHB4hsa-miR-6777-5p88.7638NM_004444
EPHB4hsa-miR-6889-5p88.7638NM_004444
EPHB4hsa-miR-3127-3p88.6092NM_004444
EPHB4hsa-miR-624-3p87.016NM_004444
EPHB4hsa-miR-6887-3p85.6297NM_004444
EPHB4hsa-miR-452784.7851NM_004444
EPHB4hsa-miR-6774-5p81.0689NM_004444
EPHB4hsa-miR-1185-2-3p80.1076NM_004444
EPHB4hsa-miR-4789-5p80.1076NM_004444
EPHB4hsa-miR-1185-1-3p80.1076NM_004444
EPHB4hsa-let-7f-2-3p80.1076NM_004444
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Motifs and transcription factors (TFs) regulating EPHB4

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
EPHB4dbtfbs__GMEB1_K562_ENCSR928KOR_merged_N1GMEB1 (directAnnotation).
EPHB4transfac_pro__M02896SPI1 (inferredBy_Orthology).
EPHB4metacluster_74.6HNF1A (directAnnotation).
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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.

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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.
Target nameDrug nameDrug IDDrug type
EPHB4"3-({4-[(5-CHLORO-1,3-BENZODIOXOL-4-YL)AMINO]PYRIMIDIN-2-YL}AMINO)BENZAMIDE"

DB07256

small molecule
EPHB4"3-({4-[(5-chloro-1,3-benzodioxol-4-yl)amino]pyrimidin-2-yl}amino)benzenesulfonamide"

DB07252

small molecule
EPHB4"Dasatinib"

DB01254

small molecule
EPHB4"Fostamatinib"

DB12010

small molecule
EPHB4"N'-(3-CHLORO-4-METHOXY-PHENYL)-N-(3,4,5-TRIMETHOXYPHENYL)-1,3,5-TRIAZINE-2,4-DIAMINE"

DB07251

small molecule
EPHB4"N'-(5-CHLORO-1,3-BENZODIOXOL-4-YL)-N-(3,4,5- TRIMETHOXYPHENYL)PYRIMIDINE-2,4-DIAMINE"

DB07250

small molecule
EPHB4"N'-(5-chloro-1,3-benzodioxol-4-yl)-N-(3-methylsulfonylphenyl)pyrimidine-2,4-diamine"

DB07253

small molecule
EPHB4"N'-(5-CHLORO-1,3-BENZODIOXOL-4-YL)-N-(3-MORPHOLIN-4-YLPHENYL)PYRIMIDINE-2,4-DIAMINE"

DB07255

small molecule
EPHB4"N-(5-chloro-1,3-benzodioxol-4-yl)-6-methoxy-7-(3-piperidin-1-ylpropoxy)quinazolin-4-amine"

DB07249

small molecule
EPHB4"N-[3-[[4-[(5-CHLORO-1,3-BENZODIOXOL-4-YL)AMINO]PYRIMIDIN-2-YL]AMINO]PHENYL]METHANESULFONAMIDE"

DB07254

small molecule
EPHB4"Tesevatinib"

DB11973

small molecule
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1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."