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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene (This gene does not contain this module)

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor (This gene does not contain this module)

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Acts as a drug target< (This gene does not contain this module)

Gene: ECHDC1

Summary for ECHDC1

Gene informationGene symbol

ECHDC1

Ensembl ID

ENSG00000093144

Entrez ID

55862

Gene nameethylmalonyl-CoA decarboxylase 1
SynonymsdJ351K20.2
Gene typeprotein_coding
UniProtAcc

Q9NTX5


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Dataset with differentially expressed gene: ECHDC1

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE153697

patientsBone marrow aspirateAcute lymphoblastic leukemiaRelapsed B-cell acute lymphoblastic leukemia (B-ALL)Immunotherapyanti-CD19 CAR-TNAMalignant cells0.3157371.42e-19

GSE199333

patientsBone marrow aspirateAcute myeloid leukemiaPrimary FLT3-ITD-mutated acute myeloid leukemia (AML)Targeted therapygilteritinibpostMalignant cells0.3455730.00e+00

GSE131984_JQ1

SUM159 cell lineCell lineBreast cancerTriple-negative breast cancer (TNBC)Targeted therapyJQ1NAMalignant cells-0.5184941.26e-44

GSE131984_JQ1Pac

SUM159 cell lineCell lineBreast cancerTriple-negative breast cancer (TNBC)Targeted therapyJQ1 + paclitaxelNAMalignant cells-0.5422853.47e-31

GSE131984_JQ1Pal

SUM159 cell lineCell lineBreast cancerTriple-negative breast cancer (TNBC)Targeted therapyJQ1 + palbociclibNAMalignant cells-0.5895060.00e+00

GSE131984_Pal

SUM159 cell lineCell lineBreast cancerTriple-negative breast cancer (TNBC)Targeted therapypalbociclibNAMalignant cells-0.4271623.05e-18

GSE175716

PDXTumor tissueLiver cancerAdvanced hepatocellular carcinomaTargeted therapysorafenibNAMalignant cells1.51910.00e+00

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Expression of ECHDC1 in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to ECHDC1

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.

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MicroRNAs (miRNA) regulating ECHDC1

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
ECHDC1hsa-miR-889-3p94.6894NM_001105544
ECHDC1hsa-miR-1213692.9861NM_001105544
ECHDC1hsa-miR-526a-5p92.7834NM_018479
ECHDC1hsa-miR-519a-5p92.7834NM_018479
ECHDC1hsa-miR-519c-5p92.7834NM_018479
ECHDC1hsa-miR-518e-5p92.7834NM_018479
ECHDC1hsa-miR-518d-5p92.7834NM_018479
ECHDC1hsa-miR-518f-5p92.7834NM_018479
ECHDC1hsa-miR-522-5p92.7834NM_018479
ECHDC1hsa-miR-520c-5p92.7834NM_018479
ECHDC1hsa-miR-523-5p92.7834NM_018479
ECHDC1hsa-miR-519b-5p92.7834NM_018479
ECHDC1hsa-miR-202-5p92.3045NM_018479
ECHDC1hsa-miR-3614-3p92.1128NM_001105544
ECHDC1hsa-miR-219b-3p90.5706NM_018479
ECHDC1hsa-miR-94490.3895NM_018479
ECHDC1hsa-miR-580-5p88.9159NM_001105544
ECHDC1hsa-miR-548n87.8134NM_001105544
ECHDC1hsa-miR-302c-5p86.7842NM_001105544
ECHDC1hsa-miR-6821-3p85.5845NM_018479
ECHDC1hsa-miR-23a-3p85.5045NM_001105544
ECHDC1hsa-miR-23b-3p85.5045NM_001105544
ECHDC1hsa-miR-23c85.5045NM_001105544
ECHDC1hsa-miR-130b-5p85.1877NM_018479
ECHDC1hsa-miR-877-3p85.0056NM_018479
ECHDC1hsa-miR-392684.9171NM_001105544
ECHDC1hsa-miR-1252-3p82.914NM_001105544
ECHDC1hsa-miR-4709-5p82.1658NM_001105544
ECHDC1hsa-miR-516b-3p81.3643NM_018479
ECHDC1hsa-miR-516a-3p81.3643NM_018479
ECHDC1hsa-miR-7162-5p81.3643NM_018479
ECHDC1hsa-miR-589-3p81.3125NM_001105544
ECHDC1hsa-miR-3940-5p81.0314NM_001105544
ECHDC1hsa-miR-450781.0314NM_001105544
ECHDC1hsa-miR-548s80.4207NM_001105544
ECHDC1hsa-miR-6781-3p80.0405NM_018479
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Motifs and transcription factors (TFs) regulating ECHDC1

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
ECHDC1taipale_tf_pairs__ETV5_HOXA2_RSCGGWAATKR_CAPETV5; HOXA2 (directAnnotation).
ECHDC1transfac_pro__M04748GABPA (directAnnotation).
ECHDC1metacluster_191.3EHF; ELF1; ELF1; ELF1; ELF4; ELK1; ELK3; ELK3; ELK4; ELK4; ERF; ETS1; ETS2; ETV3; ETV4; ETV5; FEV; FEV; FLI1; FLI1; GABPA; GABPA; GABPA; GABPA; GABPA; GABPA; SPDEF; ZNF200 (directAnnotation). ELK1; ELK1; ELK3; ELK3; ELK4; ELK4; ETV1; ETV1; ETV4; ETV4; ETV4; ETV5; GABPA; GABPA (inferredBy_Orthology).
ECHDC1hdpi__TP73TP73 (directAnnotation).
ECHDC1metacluster_166.4BCLAF1; EHF; ELF1; ELF1; ELF1; ELF1; ELF1; ELF1; ELF2; ELF2; ELF4; ELK1; ELK1; ELK1; ELK1; ELK1; ELK1; ELK1; ELK1; ELK1; ELK3; ELK3; ELK3; ELK3; ELK4; ERG; ERG; ERG; ERG; ETS1; ETS1; ETS1; ETS1; ETS1; ETV1; ETV1; ETV1; ETV1; ETV2; ETV3; ETV4; ETV4; ETV4; ETV4; ETV4; ETV5; ETV7; FEV; FEV; FLI1; FLI1; FLI1; FLI1; GABPA; GABPA; GABPA; GABPA; GABPA; GABPA; GABPB1; GATAD1; PHF20; ZBTB25; ZBTB40 (directAnnotation). EHF; ELF1; ELF1; ELF3; ELF5; ELK3; ELK4; ERG; ETS1; ETV1; ETV2; ETV4; FLI1; GABPA; GABPA (inferredBy_Orthology).
ECHDC1taipale_tf_pairs__ETV5_EVX1_RSCGGWAATKR_CAPETV5; EVX1 (directAnnotation).
ECHDC1hdpi__FLI1FLI1 (directAnnotation).
ECHDC1swissregulon__hs__ETV6ETV6 (directAnnotation).
ECHDC1cisbp__M02645ETS1 (directAnnotation).
ECHDC1hdpi__ETV4ETV4 (directAnnotation).
ECHDC1taipale_tf_pairs__ETV2_HES7_NNCACGTGNNNNNCGGAWRY_CAP_reprETV2; HES7 (directAnnotation).
ECHDC1transfac_pro__M00492STAT1 (directAnnotation).
ECHDC1metacluster_191.2ELK4; NR2C2; NR2C2; NR2C2; NR2C2 (directAnnotation). GABPA (inferredBy_Orthology).
ECHDC1taipale_tf_pairs__FOXO1_ELK1_RSCGGATGTTRTN_CAPELK1; FOXO1 (directAnnotation).
ECHDC1metacluster_138.2ELF1; ELF2; ELF4; ELK1; ELK1; ELK1; ELK1; ELK3; ELK4; ELK4; ELK4; ELK4; ELK4; ELK4; ELK4; ERF; ERG; ERG; ERG; ERG; ETS1; ETS1; ETS2; ETS2; ETV1; ETV1; ETV1; ETV2; ETV3; ETV4; ETV5; ETV5; FEV; FLI1; FLI1; GABPA; GABPA; KMT2B; SPDEF; SPDEF; SPDEF; ZBTB11; ZNF518A; ZNF580 (directAnnotation). ELF1; ELF2; ELF4; ELK1; ELK1; ELK3; ELK4; ERG; ETS1; ETS2; ETV1; ETV2; ETV3; ETV4; ETV5; FEV; FLI1; FLI1; GABPA; SPDEF; SPDEF (inferredBy_Orthology).
ECHDC1hdpi__ELF2ELF2 (directAnnotation).
ECHDC1swissregulon__hs__ELK1ELK1 (directAnnotation).
ECHDC1metacluster_183.4ETS1 (inferredBy_Orthology).
ECHDC1taipale_tf_pairs__E2F1_ELK1_SGCGCNNNNNCGGAAGN_CAP_reprE2F1; ELK1 (directAnnotation).
ECHDC1taipale_cyt_meth__ZNF385D_NCGTCGCGACGN_eDBD_methZNF385D (directAnnotation).
ECHDC1taipale_tf_pairs__HOXB2_ELK3_RSCGGAAGTMRTTA_CAPELK3; HOXB2 (directAnnotation).
ECHDC1transfac_pro__M04848TAF1 (directAnnotation).
ECHDC1taipale_tf_pairs__ETV2_HES7_RSCGGAANNNNNNNCACGTGNN_CAP_reprETV2; HES7 (directAnnotation).
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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.

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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.



1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."