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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene (This gene does not contain this module)

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor (This gene does not contain this module)

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Acts as a drug target< (This gene does not contain this module)

Gene: CSRNP1

Summary for CSRNP1

Gene informationGene symbol

CSRNP1

Ensembl ID

ENSG00000144655

Entrez ID

64651

Gene namecysteine and serine rich nuclear protein 1
SynonymsAXUD1|DKFZp566F164|FAM130B|TAIP-3|URAX1
Gene typeprotein_coding
UniProtAcc

Q96S65


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Dataset with differentially expressed gene: CSRNP1

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE169246_PacTissue

patientsTumor tissueBreast cancerAdvanced triple-negative breast cancer (TNBC)ChemotherapypaclitaxelpreCD8+ T cells0.2711870.00e+00

GSE169246_PacAteTissue

patientsTumor tissueBreast cancerAdvanced triple-negative breast cancer (TNBC)Immunotherapyatezolizumab + paclitaxelpostB cells0.4351240.00e+00

GSE169246_PacAteTissue

patientsTumor tissueBreast cancerAdvanced triple-negative breast cancer (TNBC)Immunotherapyatezolizumab + paclitaxelpostCD4+ T cells0.3731850.00e+00

GSE169246_PacAteTissue

patientsTumor tissueBreast cancerAdvanced triple-negative breast cancer (TNBC)Immunotherapyatezolizumab + paclitaxelpostCD8+ T cells0.5206050.00e+00

GSE169246_PacAteTissue

patientsTumor tissueBreast cancerAdvanced triple-negative breast cancer (TNBC)Immunotherapyatezolizumab + paclitaxelpreCD8+ T cells0.290990.00e+00

GSE164551

patientsBone marrow aspirateMultiple myelomaRefractory multiple myeloma (MM)ImmunotherapyCAR-TNACD8+ T cells-0.4629173.45e-04

GSE164551

patientsBone marrow aspirateMultiple myelomaRefractory multiple myeloma (MM)ImmunotherapyCAR-TNAMono/Macro-0.5525269.52e-41

PMID34715028

patientsTumor tissueKidney cancerClear cell renal cell carcinoma (ccRCC)ImmunotherapynivolumabpostCD4+ T cells-1.096610.00e+00

PMID34715028

patientsTumor tissueKidney cancerClear cell renal cell carcinoma (ccRCC)ImmunotherapynivolumabpostCD8+ T cells-0.8003220.00e+00

GSE207422_Tor

patientsTumor tissueLung cancerEGFR/ALK mutation negative non-small cell lung cancer (NSCLC)Immunotherapytoripalimab + carboplatin + (docetaxel or pemetrexed or emcitabine)postMono/Macro0.3217182.34e-07

GSE207422_Tor

patientsTumor tissueLung cancerEGFR/ALK mutation negative non-small cell lung cancer (NSCLC)Immunotherapytoripalimab + carboplatin + (docetaxel or pemetrexed or emcitabine)postNeutrophils0.3929194.06e-11

GSE189460

patientsBone marrow aspirateMultiple myelomaMultiple myeloma (MM)Targeted therapybortezomib + melphalan + prednisolonepreMalignant cells0.2748280.00e+00

GSE189460

patientsBone marrow aspirateMultiple myelomaMultiple myeloma (MM)Targeted therapybortezomib + melphalan + prednisolonepreCD8+ T cells-0.2922141.27e-24

GSE199333

patientsBone marrow aspirateAcute myeloid leukemiaPrimary FLT3-ITD-mutated acute myeloid leukemia (AML)Targeted therapygilteritinibpostMalignant cells-0.4840950.00e+00

GSE199333

patientsBone marrow aspirateAcute myeloid leukemiaPrimary FLT3-ITD-mutated acute myeloid leukemia (AML)Targeted therapygilteritinibpostNK cells-0.5950470.00e+00

GSE199333

patientsBone marrow aspirateAcute myeloid leukemiaPrimary FLT3-ITD-mutated acute myeloid leukemia (AML)Targeted therapygilteritinibpreNK cells0.4376723.27e-08

GSE199333

patientsBone marrow aspirateAcute myeloid leukemiaPrimary FLT3-ITD-mutated acute myeloid leukemia (AML)Targeted therapygilteritinibpreCD8+ T cells0.2948834.75e-10

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Expression of CSRNP1 in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to CSRNP1

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.

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MicroRNAs (miRNA) regulating CSRNP1

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
CSRNP1hsa-miR-6721-5p96.7757NM_001320560
CSRNP1hsa-miR-1266-5p95.5471NM_001320559
CSRNP1hsa-miR-486-3p95.0668NM_001320560
CSRNP1hsa-miR-7-2-3p95.0541NM_001320560
CSRNP1hsa-miR-7-1-3p95.0541NM_001320560
CSRNP1hsa-miR-451894.4388NM_001320559
CSRNP1hsa-miR-3688-3p93.7272NM_001320559
CSRNP1hsa-miR-519d-5p92.7971NM_001320559
CSRNP1hsa-miR-132291.9945NM_001320559
CSRNP1hsa-miR-6505-5p90.3336NM_001320560
CSRNP1hsa-miR-6838-5p89.6191NM_001320560
CSRNP1hsa-miR-424-5p89.6191NM_001320560
CSRNP1hsa-miR-195-5p89.6191NM_001320560
CSRNP1hsa-miR-15a-5p89.6191NM_001320560
CSRNP1hsa-miR-497-5p89.6191NM_001320560
CSRNP1hsa-miR-15b-5p89.6191NM_001320560
CSRNP1hsa-miR-16-5p89.6191NM_001320560
CSRNP1hsa-miR-211-3p89.0597NM_001320559
CSRNP1hsa-miR-5587-5p88.6465NM_001320560
CSRNP1hsa-miR-3934-3p84.7338NM_001320559
CSRNP1hsa-miR-939-3p83.0746NM_001320559
CSRNP1hsa-miR-515-5p82.7886NM_001320559
CSRNP1hsa-miR-519e-5p82.7886NM_001320559
CSRNP1hsa-miR-431981.8082NM_001320560
CSRNP1hsa-miR-366881.2436NM_001320559
CSRNP1hsa-miR-548ao-3p81.239NM_001320559
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Motifs and transcription factors (TFs) regulating CSRNP1

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
CSRNP1tfdimers__MD00225NKX6-2; POU5F1 (directAnnotation).
CSRNP1metacluster_145.6ZNF79; ZNF79 (directAnnotation).
CSRNP1tfdimers__MD00454ARID3A; PAX4 (directAnnotation).
CSRNP1kznf__ZNF384_Schmitges2016_RCADEZNF384 (directAnnotation).
CSRNP1metacluster_157.2ATF3; ATF3; ATF3; BACH1; BACH1; BACH1; BACH2; BACH2; BACH2; BACH2; BATF; BATF; BCL11A; FOS; FOS; FOS; FOS; FOS; FOS; FOSB; FOSL1; FOSL1; FOSL1; FOSL1; FOSL1; FOSL1; FOSL2; FOSL2; FOSL2; JDP2; JDP2; JDP2; JDP2; JDP2; JDP2; JDP2; JUN; JUN; JUN; JUN; JUN; JUNB; JUNB; JUNB; JUNB; JUNB; JUNB; JUND; JUND; JUND; JUND; JUND; JUND; JUND; JUND; JUND; MAF; MAFB; MAFF; MAFG; MAFK; NFE2; NFE2; NFE2; NFE2; NFE2; NFE2; NFE2L1; NFE2L1; NFE2L2; NFE2L3; ZNF3; ZSCAN5C (directAnnotation). FOSL1; JUN; JUN; JUN; JUNB; JUNB; JUND (inferredBy_Orthology).
CSRNP1metacluster_32.24ZNF287 (directAnnotation).
CSRNP1metacluster_137.2ATF3; BACH2; BATF; BATF; BATF; BATF; BATF3; FOS; FOS; FOS; FOS; FOS; FOS; FOS; FOS; FOS; FOS; FOSB; FOSB; FOSB; FOSB; FOSB; FOSL1; FOSL1; FOSL1; FOSL1; FOSL1; FOSL2; FOSL2; FOSL2; FOSL2; FOSL2; FOSL2; FOSL2; INSM2; JUN; JUN; JUN; JUN; JUN; JUN; JUN; JUN; JUN; JUN; JUN; JUN; JUNB; JUNB; JUNB; JUNB; JUNB; JUND; JUND; JUND; JUND; JUND; SMARCC1 (directAnnotation). ATF3; ATF3; BATF; FOS; FOSB; FOSL1; FOSL1; FOSL2; FOSL2; FOSL2; JUN; JUN; JUN; JUN; JUN; JUN; JUN; JUNB; JUND; JUND; JUND; JUND (inferredBy_Orthology).
CSRNP1kznf__ZNF571_Imbeault2017_OM_RCADEZNF571 (directAnnotation).
CSRNP1kznf__ZNF548_Imbeault2017_RP_RCADEZNF548 (directAnnotation).
CSRNP1metacluster_144.5ZNF610; ZNF610; ZNF610 (directAnnotation).
CSRNP1swissregulon__hs__CHD1CHD1 (directAnnotation).
CSRNP1kznf__ZNF383_Imbeault2017_OM_RCADEZNF383 (directAnnotation).
CSRNP1transfac_pro__M01303SP1 (directAnnotation).
CSRNP1transfac_pro__M07329SP7 (directAnnotation).
CSRNP1taipale__ELK1_full_NACTTCCGSCGGAARMN_reprELK1 (directAnnotation).
CSRNP1tfdimers__MD00377PBX1 (directAnnotation).
CSRNP1tfdimers__MD00595SREBF1; SREBF2; TBP (directAnnotation).
CSRNP1tfdimers__MD00232CEBPB; TAF6; TBP (directAnnotation).
CSRNP1swissregulon__hs__FOXO3FOXO3 (directAnnotation).
CSRNP1metacluster_2.8IRF4; IRF5; IRF6; IRF9 (directAnnotation). IRF3; IRF5; IRF5; IRF6 (inferredBy_Orthology).
CSRNP1taipale_cyt_meth__CREB1_NRTGACGTN_eDBD_reprCREB1 (directAnnotation).
CSRNP1tfdimers__MD00143IKZF1; MZF1 (directAnnotation).
CSRNP1tfdimers__MD00026IRF1; MYB (directAnnotation).
CSRNP1transfac_pro__M01239RELA (directAnnotation).
CSRNP1swissregulon__hs__RUNX2RUNX2 (directAnnotation).
CSRNP1taipale_tf_pairs__TEAD4_SOX15_NACAATRNNNNNGAATGY_CAP_reprSOX15; TEAD4 (directAnnotation).
CSRNP1taipale_tf_pairs__FOXJ2_HOXB13_RTAAACWNATWAAA_CAP_reprFOXJ2; HOXB13 (directAnnotation).
CSRNP1metacluster_22.33MAFK (inferredBy_Orthology).
CSRNP1transfac_pro__M04706RELA (directAnnotation).
CSRNP1taipale_tf_pairs__ERF_SREBF2_NNCACGTGACMGGAARNN_CAP_reprERF; SREBF2 (directAnnotation).
CSRNP1taipale_tf_pairs__MYBL1_TBX21_AGGTGTGNCSGTTR_CAP_reprMYBL1; TBX21 (directAnnotation).
CSRNP1kznf__ZNF45_Imbeault2017_OM_RCADEZNF45 (directAnnotation).
CSRNP1transfac_pro__M06826ZNF516 (inferredBy_Orthology).
CSRNP1tfdimers__MD00036FOS; FOSB; FOSL1; FOSL2; ILF2; JUN; JUNB; JUND; NFATC2 (directAnnotation).
CSRNP1transfac_pro__M12441ZNF281 (inferredBy_Orthology).
CSRNP1transfac_pro__M06856ZNF611 (directAnnotation).
CSRNP1dbtfbs__GMEB2_HepG2_ENCSR745VSQ_merged_N1GMEB2 (directAnnotation).
CSRNP1kznf__ZNF382_Najafabadi2015_ChIP-seqZNF382 (directAnnotation).
CSRNP1taipale_tf_pairs__ETV2_SOX15_RSCGGAANNNNNNNYWTTGT_CAP_reprETV2; SOX15 (directAnnotation).
CSRNP1metacluster_170.2KLF1; KLF10; KLF10; KLF11; KLF11; KLF11; KLF12; KLF12; KLF14; KLF15; KLF17; KLF2; KLF5; KLF7; KLF7; KLF8; MAZ; MAZ; PATZ1; SP1; SP1; SP1; SP2; SP2; SP2; SP2; SP2; SP2; SP2; SP2; SP4; SP4; SP5; SP6; SP7; SP8; SP9; ZNF281 (directAnnotation). E2F1; E2F4; KLF10; KLF13; KLF14; KLF17; KLF2; KLF7; SP1; SP1; SP3; SP4; SP5; SP6; SP7 (inferredBy_Orthology).
CSRNP1transfac_pro__M07397ZNF148 (directAnnotation).
CSRNP1transfac_pro__M01219SP1 (directAnnotation). SP3 (inferredBy_Orthology).
CSRNP1metacluster_3.11SP1; SP1; SP2; SP3; SP3; SP4 (directAnnotation).
CSRNP1metacluster_3.7SP1; SP1; SP1; SP1; SP1; SP1; SP1; SP1; SP2; SP2; SP2; SP2; SP3; SP3; SP3; SP4; SP4; SP4; SP4; SP4; SP4; SP5 (directAnnotation).
CSRNP1transfac_pro__M07436WT1 (directAnnotation).
CSRNP1metacluster_3.14WT1; WT1 (directAnnotation).
CSRNP1swissregulon__hs__KLF6KLF6 (directAnnotation).
CSRNP1metacluster_3.4SP1; SP2; SP2; SP3 (directAnnotation).
CSRNP1metacluster_52.13LEF1; LEF1; LEF1; LEF1; TCF7; TCF7; TCF7L1; TCF7L1 (directAnnotation).
CSRNP1dbtfbs__ZNF664_HEK293_ENCSR714LZQ_merged_N1ZNF664 (directAnnotation).
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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.

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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.



1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."