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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene (This gene does not contain this module)

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor (This gene does not contain this module)

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Acts as a drug target

Gene: CPT1A

Summary for CPT1A

Gene informationGene symbol

CPT1A

Ensembl ID

ENSG00000110090

Entrez ID

1374

Gene namecarnitine palmitoyltransferase 1A
SynonymsCPT1|CPT1-L|L-CPT1
Gene typeprotein_coding
UniProtAcc

P50416


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Dataset with differentially expressed gene: CPT1A

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE186960

Panc1 cell lineCell linePancreatic cancerPancreatic ductal adenocarcinoma (PDAC)ChemotherapygemcitabineNAMalignant cells-0.4783511.18e-39

GSE175716

PDXTumor tissueLiver cancerAdvanced hepatocellular carcinomaTargeted therapysorafenibNAMalignant cells-0.621790.00e+00

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Expression of CPT1A in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to CPT1A

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.

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MicroRNAs (miRNA) regulating CPT1A

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
CPT1Ahsa-miR-430798.0027NM_001876
CPT1Ahsa-miR-664b-3p96.4024NM_001876
CPT1Ahsa-miR-579-3p96.4024NM_001876
CPT1Ahsa-miR-506-3p96.2375NM_001876
CPT1Ahsa-miR-124-3p95.6162NM_001876
CPT1Ahsa-miR-508795.2426NM_001876
CPT1Ahsa-miR-302c-5p94.4349NM_001031847
CPT1Ahsa-miR-6718-5p94.0783NM_001876
CPT1Ahsa-miR-203b-5p94.0783NM_001876
CPT1Ahsa-miR-60493.1165NM_001876
CPT1Ahsa-miR-453393.0684NM_001876
CPT1Ahsa-miR-1252-5p92.7841NM_001876
CPT1Ahsa-miR-510-3p91.7401NM_001876
CPT1Ahsa-miR-3613-3p90.7549NM_001876
CPT1Ahsa-miR-33b-5p90.6433NM_001876
CPT1Ahsa-miR-33a-5p90.6433NM_001876
CPT1Ahsa-miR-33a-3p90.1386NM_001876
CPT1Ahsa-miR-397789.0621NM_001876
CPT1Ahsa-miR-324-5p87.4991NM_001876
CPT1Ahsa-miR-569686.7912NM_001876
CPT1Ahsa-miR-335-3p85.7375NM_001876
CPT1Ahsa-miR-9983-3p85.5487NM_001876
CPT1Ahsa-miR-129985.3808NM_001876
CPT1Ahsa-miR-409-3p84.8653NM_001876
CPT1Ahsa-miR-426384.8036NM_001876
CPT1Ahsa-miR-568584.4311NM_001876
CPT1Ahsa-miR-4690-3p84.4311NM_001876
CPT1Ahsa-miR-651-3p84.0687NM_001876
CPT1Ahsa-miR-129-5p83.9118NM_001876
CPT1Ahsa-miR-3152-3p83.3011NM_001876
CPT1Ahsa-miR-76082.7942NM_001876
CPT1Ahsa-miR-432481.7745NM_001876
CPT1Ahsa-miR-3136-3p80.5997NM_001876
CPT1Ahsa-miR-7155-3p80.5997NM_001876
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Motifs and transcription factors (TFs) regulating CPT1A

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
CPT1Ametacluster_135.11NR2C2 (directAnnotation).
CPT1Ametacluster_125.2TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2D; TFAP2D; TFAP2D; TFAP2E; TFAP2E; TFAP2E; TFAP2E; TFAP2E; TFAP2E; ZNF611; ZNF611 (directAnnotation). TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2D; TFAP2D; TFAP2D; TFAP2D; TFAP2D; TFAP2D; TFAP2E; TFAP2E; TFAP2E; TFAP2E; TFAP2E; TFAP2E; TFAP2E (inferredBy_Orthology).
CPT1Atransfac_pro__M01199TRIM28 (directAnnotation).
CPT1Atransfac_public__M00189TFAP2A; TFAP2B; TFAP2C (directAnnotation).
CPT1Atransfac_pro__M03806ZBTB7C (directAnnotation).
CPT1Atransfac_pro__M00915TFAP2A; TFAP2B; TFAP2C (directAnnotation).
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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.

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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.
Target nameDrug nameDrug IDDrug type
CPT1A"Glyburide"

DB01016

small molecule
CPT1A"Levocarnitine"

DB00583

small molecule
CPT1A"Perhexiline"

DB01074

small molecule
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1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."