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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene (This gene does not contain this module)

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor (This gene does not contain this module)

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Acts as a drug target< (This gene does not contain this module)

Gene: CLDN12

Summary for CLDN12

Gene informationGene symbol

CLDN12

Ensembl ID

ENSG00000157224

Entrez ID

9069

Gene nameclaudin 12
SynonymsNA
Gene typeprotein_coding
UniProtAcc

NA


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Dataset with differentially expressed gene: CLDN12

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE140440

DU145 and PC cell linesCell lineProstate cancerProstate cancerChemotherapydocetaxelNAMalignant cells1.56452.38e-11

GSE139386

H3122 cell lineCell lineLung cancerEML4-ALK fusion-positive non-small cell lung cancer (NSCLC)Targeted therapyceritinibNAMalignant cells0.315540.00e+00

GSE168668

LNCaP cell lineCell lineProstate cancerProstate cancerTargeted therapyenzalutamideNAMalignant cells-0.4106330.00e+00

GSE175716

PDXTumor tissueLiver cancerAdvanced hepatocellular carcinomaTargeted therapysorafenibNAMalignant cells-0.5394830.00e+00

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Expression of CLDN12 in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to CLDN12

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.

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MicroRNAs (miRNA) regulating CLDN12

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
CLDN12hsa-miR-397599.62NM_001185072
CLDN12hsa-miR-4777-3p98.3787NM_001185072
CLDN12hsa-miR-651-3p96.9903NM_001185072
CLDN12hsa-miR-450096.0132NM_001185072
CLDN12hsa-let-7a-5p94.9868NM_001185072
CLDN12hsa-let-7b-5p94.9868NM_001185072
CLDN12hsa-let-7e-5p94.9868NM_001185072
CLDN12hsa-let-7g-5p94.9868NM_001185072
CLDN12hsa-miR-98-5p94.9868NM_001185072
CLDN12hsa-let-7f-5p94.9868NM_001185072
CLDN12hsa-let-7c-5p94.9868NM_001185072
CLDN12hsa-let-7i-5p94.9868NM_001185072
CLDN12hsa-miR-142-3p94.8195NM_001185072
CLDN12hsa-miR-2467-5p94.2012NM_001185072
CLDN12hsa-miR-445893.5421NM_001185072
CLDN12hsa-let-7d-5p93.5421NM_001185072
CLDN12hsa-miR-318893.462NM_001185072
CLDN12hsa-miR-6884-5p93.462NM_001185072
CLDN12hsa-miR-485-5p93.462NM_001185072
CLDN12hsa-miR-548c-3p92.2195NM_001185072
CLDN12hsa-miR-806092.2045NM_001185072
CLDN12hsa-miR-431692.0931NM_001185072
CLDN12hsa-miR-3667-5p91.83NM_001185072
CLDN12hsa-miR-196a-1-3p90.7409NM_001185072
CLDN12hsa-miR-23c90.6681NM_001185072
CLDN12hsa-miR-23b-3p90.6681NM_001185072
CLDN12hsa-miR-23a-3p90.6681NM_001185072
CLDN12hsa-miR-98-3p90.6149NM_001185072
CLDN12hsa-let-7a-3p90.6149NM_001185072
CLDN12hsa-let-7b-3p90.6149NM_001185072
CLDN12hsa-let-7f-1-3p90.6149NM_001185072
CLDN12hsa-miR-302b-5p90.4278NM_001185072
CLDN12hsa-miR-302d-5p90.4278NM_001185072
CLDN12hsa-miR-3120-3p89.8365NM_001185072
CLDN12hsa-miR-616-5p88.8324NM_001185072
CLDN12hsa-miR-33a-3p88.5597NM_001185072
CLDN12hsa-miR-548m88.3872NM_001185072
CLDN12hsa-miR-467888.2598NM_001185072
CLDN12hsa-miR-5692a87.9005NM_001185072
CLDN12hsa-miR-548ad-5p87.3373NM_001185072
CLDN12hsa-miR-548am-5p87.3373NM_001185072
CLDN12hsa-miR-548w87.3373NM_001185072
CLDN12hsa-miR-548d-5p87.3373NM_001185072
CLDN12hsa-miR-548ak87.3373NM_001185072
CLDN12hsa-miR-548as-5p87.3373NM_001185072
CLDN12hsa-miR-548o-5p87.3373NM_001185072
CLDN12hsa-miR-548h-5p87.3373NM_001185072
CLDN12hsa-miR-548ae-5p87.3373NM_001185072
CLDN12hsa-miR-548au-5p87.3373NM_001185072
CLDN12hsa-miR-548c-5p87.3373NM_001185072
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Motifs and transcription factors (TFs) regulating CLDN12

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
CLDN12transfac_pro__M06035ZNF749 (directAnnotation).
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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.

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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.



1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."