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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene (This gene does not contain this module)

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor (This gene does not contain this module)

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Acts as a drug target

Gene: CDK16

Summary for CDK16

Gene informationGene symbol

CDK16

Ensembl ID

ENSG00000102225

Entrez ID

5127

Gene namecyclin dependent kinase 16
SynonymsFLJ16665|PCTAIRE|PCTAIRE1|PCTGAIRE|PCTK1
Gene typeprotein_coding
UniProtAcc

Q00536


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Dataset with differentially expressed gene: CDK16

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE186960

Panc1 cell lineCell linePancreatic cancerPancreatic ductal adenocarcinoma (PDAC)ChemotherapygemcitabineNAMalignant cells0.3932481.14e-33

GSE139386

H3122 cell lineCell lineLung cancerEML4-ALK fusion-positive non-small cell lung cancer (NSCLC)Targeted therapyceritinibNAMalignant cells-0.4916590.00e+00

GSE131984_JQ1Pac

SUM159 cell lineCell lineBreast cancerTriple-negative breast cancer (TNBC)Targeted therapyJQ1 + paclitaxelNAMalignant cells-0.4444261.52e-23

GSE131984_JQ1Pal

SUM159 cell lineCell lineBreast cancerTriple-negative breast cancer (TNBC)Targeted therapyJQ1 + palbociclibNAMalignant cells-0.3437962.09e-18

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Expression of CDK16 in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to CDK16

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.

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MicroRNAs (miRNA) regulating CDK16

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
CDK16hsa-miR-92b-3p98.3619NM_033018
CDK16hsa-miR-92a-3p98.3619NM_033018
CDK16hsa-miR-32-5p98.3619NM_033018
CDK16hsa-miR-367-3p98.0535NM_033018
CDK16hsa-miR-363-3p98.0535NM_033018
CDK16hsa-miR-197297.4787NM_006201
CDK16hsa-miR-25-3p97.4745NM_033018
CDK16hsa-miR-6510-5p95.1005NM_006201
CDK16hsa-miR-469294.9815NM_006201
CDK16hsa-miR-451494.5461NM_006201
CDK16hsa-miR-6721-5p93.9604NM_006201
CDK16hsa-miR-33b-5p91.9212NM_033018
CDK16hsa-miR-33a-5p91.9212NM_033018
CDK16hsa-miR-6722-3p91.8568NM_006201
CDK16hsa-miR-1912-5p91.6308NM_033018
CDK16hsa-miR-94090.7255NM_006201
CDK16hsa-miR-6893-5p89.5145NM_006201
CDK16hsa-miR-6808-5p89.5145NM_006201
CDK16hsa-miR-1909-3p89.052NM_006201
CDK16hsa-miR-319988.9301NM_006201
CDK16hsa-miR-770288.6122NM_006201
CDK16hsa-miR-24-3p87.9271NM_006201
CDK16hsa-miR-6846-5p87.2003NM_006201
CDK16hsa-miR-6848-5p87.2003NM_006201
CDK16hsa-miR-485-3p83.3251NM_033018
CDK16hsa-miR-539-3p83.3251NM_033018
CDK16hsa-miR-593-3p82.9452NM_006201
CDK16hsa-miR-504-5p82.2288NM_033018
CDK16hsa-miR-4725-5p82.2288NM_033018
CDK16hsa-miR-4690-5p81.9419NM_006201
CDK16hsa-miR-473681.0652NM_006201
CDK16hsa-miR-431781.0095NM_033018
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Motifs and transcription factors (TFs) regulating CDK16

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
CDK16metacluster_34.1ZNF143; ZNF143; ZNF143; ZNF76; ZNF76; ZNF76 (directAnnotation).
CDK16swissregulon__hs__ZBTB14ZBTB14 (directAnnotation).
CDK16jaspar__MA0502.2NFYB (directAnnotation).
CDK16cisbp__M00249WT1 (directAnnotation).
CDK16taipale_tf_pairs__ELK1_EOMES_RSCGGAANNAGGYGYNA_CAP_reprELK1; EOMES (directAnnotation).
CDK16taipale_tf_pairs__ETV2_FOXO6_RCCGGATGTTKWN_CAPETV2; FOXO6 (directAnnotation).
CDK16taipale_tf_pairs__FOXO1_ETV4_RCCGGAWGTKKN_CAPETV4; FOXO1 (directAnnotation).
CDK16hdpi__TP73TP73 (directAnnotation).
CDK16metacluster_183.4ETS1 (inferredBy_Orthology).
CDK16taipale_tf_pairs__FOXO1_ELK1_RSCGGATGTTRTN_CAPELK1; FOXO1 (directAnnotation).
CDK16metacluster_81.7CREB1 (directAnnotation).
CDK16metacluster_35.5ELF1; ELF2; ELF3; ELF3; ELK1; ELK4; ERF; ERG; ETS1; ETS1; ETS2; ETV7; ETV7; FLI1; FLI1 (directAnnotation).
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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.

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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.
Target nameDrug nameDrug IDDrug type
CDK16"(2Z,3E)-2,3'-biindole-2',3(1H,1'H)-dione 3-{O-[(3R)-3,4-dihydroxybutyl]oxime}"

DB07766

small molecule
CDK16"Fostamatinib"

DB12010

small molecule
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1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."