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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene (This gene does not contain this module)

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor (This gene does not contain this module)

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Acts as a drug target< (This gene does not contain this module)

Gene: CCDC34

Summary for CCDC34

Gene informationGene symbol

CCDC34

Ensembl ID

ENSG00000109881

Entrez ID

91057

Gene namecoiled-coil domain containing 34
SynonymsL15|NY-REN-41|RAMA3
Gene typeprotein_coding
UniProtAcc

Q96HJ3


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Dataset with differentially expressed gene: CCDC34

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE140440

DU145 and PC cell linesCell lineProstate cancerProstate cancerChemotherapydocetaxelNAMalignant cells-1.754341.98e-17

GSE186960

Panc1 cell lineCell linePancreatic cancerPancreatic ductal adenocarcinoma (PDAC)ChemotherapygemcitabineNAMalignant cells-0.8153130.00e+00

GSE131984_Pac

SUM159 cell lineCell lineBreast cancerTriple-negative breast cancer (TNBC)ChemotherapypaclitaxelNAMalignant cells0.2528743.27e-07

GSE139386

H3122 cell lineCell lineLung cancerEML4-ALK fusion-positive non-small cell lung cancer (NSCLC)Targeted therapyceritinibNAMalignant cells-0.9692610.00e+00

GSE131984_JQ1

SUM159 cell lineCell lineBreast cancerTriple-negative breast cancer (TNBC)Targeted therapyJQ1NAMalignant cells-0.4407025.04e-38

GSE131984_JQ1Pac

SUM159 cell lineCell lineBreast cancerTriple-negative breast cancer (TNBC)Targeted therapyJQ1 + paclitaxelNAMalignant cells-0.4804153.75e-27

GSE131984_JQ1Pal

SUM159 cell lineCell lineBreast cancerTriple-negative breast cancer (TNBC)Targeted therapyJQ1 + palbociclibNAMalignant cells-0.2718228.63e-12

GSE131984_Pal

SUM159 cell lineCell lineBreast cancerTriple-negative breast cancer (TNBC)Targeted therapypalbociclibNAMalignant cells-0.3208321.36e-12

GSE175716

PDXTumor tissueLiver cancerAdvanced hepatocellular carcinomaTargeted therapysorafenibNAMalignant cells0.2708261.83e-04

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Expression of CCDC34 in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to CCDC34

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.

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MicroRNAs (miRNA) regulating CCDC34

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
CCDC34hsa-miR-428299.5303NM_080654
CCDC34hsa-miR-374a-5p97.8407NM_080654
CCDC34hsa-miR-374b-5p97.5934NM_080654
CCDC34hsa-miR-5579-3p93.1465NM_080654
CCDC34hsa-miR-367192.1672NM_080654
CCDC34hsa-miR-1213691.0786NM_030771
CCDC34hsa-miR-7159-5p91.0165NM_080654
CCDC34hsa-miR-29a-5p90.6831NM_030771
CCDC34hsa-miR-432890.571NM_080654
CCDC34hsa-miR-7850-5p90.3531NM_080654
CCDC34hsa-miR-442889.8408NM_080654
CCDC34hsa-miR-548ac89.3218NM_030771
CCDC34hsa-miR-548d-3p89.3218NM_030771
CCDC34hsa-miR-548h-3p89.3218NM_030771
CCDC34hsa-miR-548bb-3p89.3218NM_030771
CCDC34hsa-miR-548z89.3218NM_030771
CCDC34hsa-miR-130b-5p88.6051NM_080654
CCDC34hsa-miR-4762-3p88.5056NM_030771
CCDC34hsa-miR-10522-5p88.4452NM_080654
CCDC34hsa-miR-124886.086NM_080654
CCDC34hsa-miR-3692-3p85.7309NM_080654
CCDC34hsa-miR-212-3p84.629NM_080654
CCDC34hsa-miR-132-3p84.629NM_080654
CCDC34hsa-miR-4724-5p83.5834NM_080654
CCDC34hsa-miR-89082.9581NM_080654
CCDC34hsa-miR-488-5p82.4735NM_030771
CCDC34hsa-miR-302f81.5093NM_030771
CCDC34hsa-miR-196a-1-3p81.3032NM_080654
CCDC34hsa-miR-548aw80.7139NM_030771
CCDC34hsa-miR-1249-5p80.5176NM_080654
CCDC34hsa-miR-6797-5p80.5176NM_080654
CCDC34hsa-miR-7853-5p80.0325NM_030771
CCDC34hsa-miR-105-5p80.0325NM_030771
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Motifs and transcription factors (TFs) regulating CCDC34

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
CCDC34dbtfbs__E2F8_representative_N1E2F8 (directAnnotation).
CCDC34taipale_tf_pairs__ETV2_HES7_NNCACGTGNNNNNCGGAWRY_CAP_reprETV2; HES7 (directAnnotation).
CCDC34taipale_cyt_meth__E2F2_GCGCGCGCGYW_eDBD_reprE2F2 (directAnnotation).
CCDC34taipale_tf_pairs__E2F1_HES7_RRCRCGYGYNNNNSGCGCSN_CAP_reprE2F1; HES7 (directAnnotation).
CCDC34jaspar__MA1122.1TFDP1 (directAnnotation).
CCDC34metacluster_166.4BCLAF1; EHF; ELF1; ELF1; ELF1; ELF1; ELF1; ELF1; ELF2; ELF2; ELF4; ELK1; ELK1; ELK1; ELK1; ELK1; ELK1; ELK1; ELK1; ELK1; ELK3; ELK3; ELK3; ELK3; ELK4; ERG; ERG; ERG; ERG; ETS1; ETS1; ETS1; ETS1; ETS1; ETV1; ETV1; ETV1; ETV1; ETV2; ETV3; ETV4; ETV4; ETV4; ETV4; ETV4; ETV5; ETV7; FEV; FEV; FLI1; FLI1; FLI1; FLI1; GABPA; GABPA; GABPA; GABPA; GABPA; GABPA; GABPB1; GATAD1; PHF20; ZBTB25; ZBTB40 (directAnnotation). EHF; ELF1; ELF1; ELF3; ELF5; ELK3; ELK4; ERG; ETS1; ETV1; ETV2; ETV4; FLI1; GABPA; GABPA (inferredBy_Orthology).
CCDC34metacluster_34.1ZNF143; ZNF143; ZNF143; ZNF76; ZNF76; ZNF76 (directAnnotation).
CCDC34swissregulon__hs__ZBTB14ZBTB14 (directAnnotation).
CCDC34metacluster_34.3EGR1; ETS1; SETDB1; SIX5; SIX5; ZNF143; ZNF76 (directAnnotation).
CCDC34transfac_pro__M04918EGR1 (directAnnotation).
CCDC34hdpi__FLI1FLI1 (directAnnotation).
CCDC34jaspar__MA0748.2YY2 (directAnnotation).
CCDC34metacluster_182.10ZFX (directAnnotation).
CCDC34taipale_cyt_meth__ZBTB2_NTTTCCGGTAMN_eDBD_meth_reprZBTB2 (directAnnotation).
CCDC34taipale_tf_pairs__ETV5_HOXA13_NNCGGAWGTNRTWAA_CAPETV5; HOXA13 (directAnnotation).
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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.

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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.



1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."