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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene (This gene does not contain this module)

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor (This gene does not contain this module)

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Acts as a drug target

Gene: CBX5

Summary for CBX5

Gene informationGene symbol

CBX5

Ensembl ID

ENSG00000094916

Entrez ID

23468

Gene namechromobox 5
SynonymsHP1|HP1-ALPHA|HP1Hs-alpha
Gene typeprotein_coding
UniProtAcc

P45973


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Dataset with differentially expressed gene: CBX5

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE186960

Panc1 cell lineCell linePancreatic cancerPancreatic ductal adenocarcinoma (PDAC)ChemotherapygemcitabineNAMalignant cells0.3276891.19e-24

GSE153697

patientsBone marrow aspirateAcute lymphoblastic leukemiaRelapsed B-cell acute lymphoblastic leukemia (B-ALL)Immunotherapyanti-CD19 CAR-TNAMalignant cells0.3123741.41e-14

GSE207422_Sin

patientsTumor tissueLung cancerEGFR/ALK mutation negative non-small cell lung cancer (NSCLC)Immunotherapysintilimab + carboplatin + (docetaxel or pemetrexed or emcitabine)postMalignant cells-0.3529192.16e-02

GSE189460

patientsBone marrow aspirateMultiple myelomaMultiple myeloma (MM)Targeted therapybortezomib + melphalan + prednisolonepreMalignant cells0.3398020.00e+00

GSE139386

H3122 cell lineCell lineLung cancerEML4-ALK fusion-positive non-small cell lung cancer (NSCLC)Targeted therapyceritinibNAMalignant cells-0.5512920.00e+00

GSE199333

patientsBone marrow aspirateAcute myeloid leukemiaPrimary FLT3-ITD-mutated acute myeloid leukemia (AML)Targeted therapygilteritinibpostMalignant cells0.375580.00e+00

GSE164897_VemCob

A375 cell lineCell lineMelanomaBRAFV600E-mutant melanomaTargeted therapyvemurafenib + combimetinibNAMalignant cells0.2871970.00e+00

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Expression of CBX5 in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to CBX5

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.

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MicroRNAs (miRNA) regulating CBX5

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
CBX5hsa-miR-6780a-5p99.2209NM_001127321
CBX5hsa-miR-616-5p98.9267NM_001127321
CBX5hsa-miR-371b-5p98.9267NM_001127321
CBX5hsa-miR-373-5p98.9267NM_001127321
CBX5hsa-miR-1273h-5p98.798NM_001127321
CBX5hsa-miR-6779-5p98.798NM_001127321
CBX5hsa-miR-3689b-3p98.798NM_001127321
CBX5hsa-miR-3689c98.798NM_001127321
CBX5hsa-miR-30b-3p98.798NM_001127321
CBX5hsa-miR-3689a-3p98.798NM_001127321
CBX5hsa-miR-450098.3371NM_001127321
CBX5hsa-miR-1207-5p98.1703NM_001127321
CBX5hsa-let-7i-5p97.6766NM_001127321
CBX5hsa-let-7c-5p97.6766NM_001127321
CBX5hsa-let-7b-5p97.6766NM_001127321
CBX5hsa-let-7e-5p97.6766NM_001127321
CBX5hsa-let-7a-5p97.6766NM_001127321
CBX5hsa-let-7g-5p97.6766NM_001127321
CBX5hsa-miR-98-5p97.6766NM_001127321
CBX5hsa-let-7f-5p97.6766NM_001127321
CBX5hsa-let-7d-5p97.3747NM_001127321
CBX5hsa-miR-445897.3747NM_001127321
CBX5hsa-miR-651-3p97.2614NM_001127321
CBX5hsa-miR-4763-3p97.1447NM_001127321
CBX5hsa-miR-3925-5p96.0906NM_001127321
CBX5hsa-miR-153-5p95.4128NM_001127321
CBX5hsa-miR-4766-5p95.1983NM_001127321
CBX5hsa-miR-3613-3p94.872NM_001127321
CBX5hsa-miR-7-1-3p94.8251NM_001127321
CBX5hsa-miR-7-2-3p94.8251NM_001127321
CBX5hsa-miR-223-3p94.8184NM_001127321
CBX5hsa-miR-149-5p94.6161NM_001127321
CBX5hsa-miR-313293.6734NM_001127321
CBX5hsa-miR-1213693.4731NM_001127321
CBX5hsa-miR-5692a92.921NM_001127321
CBX5hsa-miR-323b-3p92.3976NM_001127321
CBX5hsa-miR-94092.237NM_001127321
CBX5hsa-miR-6893-5p92.237NM_001127321
CBX5hsa-miR-6808-5p92.237NM_001127321
CBX5hsa-miR-548c-3p92.2132NM_001127321
CBX5hsa-miR-197-5p92.1136NM_001127321
CBX5hsa-miR-314891.8364NM_001127321
CBX5hsa-miR-302d-5p91.7041NM_001127321
CBX5hsa-miR-302b-5p91.7041NM_001127321
CBX5hsa-miR-1228-3p91.6871NM_001127321
CBX5hsa-miR-479491.5474NM_001127321
CBX5hsa-miR-664a-5p90.7548NM_001127321
CBX5hsa-miR-7106-5p90.4732NM_001127321
CBX5hsa-miR-447890.3305NM_001127321
CBX5hsa-miR-6831-5p88.5051NM_001127321
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Motifs and transcription factors (TFs) regulating CBX5

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
CBX5metacluster_174.3MBD2; NFYA; NFYB; NFYC; PBX3 (directAnnotation).
CBX5metacluster_174.2CEBPZ; CEBPZ; DRAP1; FOS; FOXI1; FOXI1; HMGXB3; IRF3; NFYA; NFYA; NFYA; NFYA; NFYA; NFYA; NFYA; NFYA; NFYA; NFYB; NFYB; NFYB; NFYB; NFYB; NFYC; NFYC; NFYC; NFYC; NFYC; NFYC; NFYC; PBX3; PBX3; SP2 (directAnnotation). NFYA; NFYA; NFYC; PBX1; PBX3 (inferredBy_Orthology).
CBX5metacluster_55.3E2F6; EGR1; NRF1; NRF1; NRF1; NRF1; NRF1; NRF1; NRF1; NRF1; NRF1; NRF1; ZBTB2; ZSCAN10 (directAnnotation). NFE2L1; NRF1; NRF1; NRF1 (inferredBy_Orthology).
CBX5transfac_pro__M04950EGR1 (directAnnotation).
CBX5metacluster_15.3E2F1; E2F6; E2F8; E2F8; TFDP1 (directAnnotation). E2F3 (inferredBy_Orthology).
CBX5metacluster_197.2E2F4; E2F7; E2F7; E2F7; E2F8; E2F8 (directAnnotation).
CBX5taipale_tf_pairs__E2F1_ELK1_SGCGCNNNNNCGGAAGN_CAP_reprE2F1; ELK1 (directAnnotation).
CBX5transfac_pro__M00652NRF1 (directAnnotation).
CBX5transfac_pro__M04866HDAC2 (directAnnotation).
CBX5metacluster_174.6NFYA; NFYB; NFYB; NFYC (directAnnotation).
CBX5hdpi__TP73TP73 (directAnnotation).
CBX5taipale_tf_pairs__TEAD4_ETV4_RCCGGAAATRCC_CAPETV4; TEAD4 (directAnnotation).
CBX5transfac_pro__M04944GABPA (directAnnotation).
CBX5taipale_tf_pairs__TEAD4_ETV1_RSCGGAAATRCM_CAPETV1; TEAD4 (directAnnotation).
CBX5taipale_tf_pairs__TEAD4_ERG_RSCGGAAATRCC_CAPERG; TEAD4 (directAnnotation).
CBX5metacluster_55.5ZNF541 (directAnnotation).
CBX5cisbp__M02645ETS1 (directAnnotation).
CBX5taipale_tf_pairs__TEAD4_ERG_RSCGGAAATRCC_CAP_reprERG; TEAD4 (directAnnotation).
CBX5taipale_tf_pairs__HOXB2_ETV4_ACCGGAAATGAN_CAPETV4; HOXB2 (directAnnotation).
CBX5taipale_tf_pairs__ERF_FOXI1_TGTTKMCGGAWRN_CAP_reprERF; FOXI1 (directAnnotation).
CBX5jaspar__MA0502.2NFYB (directAnnotation).
CBX5metacluster_144.8ZNF30; ZNF30 (directAnnotation).
CBX5dbtfbs__GMEB1_K562_ENCSR928KOR_merged_N1GMEB1 (directAnnotation).
CBX5transfac_pro__M04918EGR1 (directAnnotation).
CBX5transfac_pro__M01219SP1 (directAnnotation). SP3 (inferredBy_Orthology).
CBX5taipale__ELK1_full_NACTTCCGSCGGAARMN_reprELK1 (directAnnotation).
CBX5cisbp__M08198ELF1 (directAnnotation).
CBX5homer__NCCACGTG_c-MycMYC (directAnnotation).
CBX5transfac_pro__M06032ZNF727 (directAnnotation).
CBX5taipale_tf_pairs__HOXB2_ETV1_ACCGGAAATGA_CAPETV1; HOXB2 (directAnnotation).
CBX5jaspar__MA1483.2ELF2 (directAnnotation).
CBX5hocomoco__TYY2_HUMAN.H11MO.0.DYY2 (directAnnotation).
CBX5metacluster_141.2E2F2; E2F3 (directAnnotation).
CBX5transfac_pro__M06305ZNF583 (inferredBy_Orthology).
CBX5metacluster_15.4SMAD6 (directAnnotation). SMAD6 (inferredBy_Orthology).
CBX5taipale_tf_pairs__ELK1_HOXA3_RSCGGTAATKR_CAP_reprELK1; HOXA3 (directAnnotation).
CBX5taipale_tf_pairs__POU2F1_ETV1_NCCGGATATGCAN_CAP_reprETV1; POU2F1 (directAnnotation).
CBX5transfac_pro__M02898SMAD3 (directAnnotation).
CBX5metacluster_15.1E2F4; E2F4; E2F4; E2F4; E2F7; ZFP69B (directAnnotation). E2F4 (inferredBy_Orthology).
CBX5hdpi__HIP2UBE2K (directAnnotation).
CBX5hdpi__NRLNRL (directAnnotation).
CBX5transfac_pro__M00430E2F1 (directAnnotation).
CBX5metacluster_3.14WT1; WT1 (directAnnotation).
CBX5transfac_pro__M01090SMAD9 (inferredBy_Orthology).
CBX5transfac_pro__M02844BCL6B (inferredBy_Orthology).
CBX5jaspar__MA0748.2YY2 (directAnnotation).
CBX5hocomoco__PROX1_HUMAN.H11MO.0.DPROX1 (directAnnotation).
CBX5kznf__ZNF736_Imbeault2017_OM_RCADEZNF736 (directAnnotation).
CBX5metacluster_136.2RFX1; RFX2; RFX2; RFX3; RFX3; RFX4; RFX5; RFX5; RFX5; RFX5; RFX5; RFX5; RFX5; RFX7; RFX7; RFXANK; RFXAP (directAnnotation). RFX3; RFX3; RFX4 (inferredBy_Orthology).
CBX5hocomoco__KAISO_HUMAN.H11MO.2.AZBTB33 (directAnnotation).
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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.

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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.
Target nameDrug nameDrug IDDrug type
CBX5"Copper"

DB09130

small molecule
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1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."