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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene (This gene does not contain this module)

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor

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Acts as a drug target< (This gene does not contain this module)

Gene: ATF1

Summary for ATF1

Gene informationGene symbol

ATF1

Ensembl ID

ENSG00000123268

Entrez ID

466

Gene nameactivating transcription factor 1
SynonymsTREB36
Gene typeprotein_coding
UniProtAcc

NA


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Dataset with differentially expressed gene: ATF1

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE140440

DU145 and PC cell linesCell lineProstate cancerProstate cancerChemotherapydocetaxelNAMalignant cells0.6516962.78e-02

GSE153697

patientsBone marrow aspirateAcute lymphoblastic leukemiaRelapsed B-cell acute lymphoblastic leukemia (B-ALL)Immunotherapyanti-CD19 CAR-TNAMalignant cells0.2778471.39e-26

GSE175716

PDXTumor tissueLiver cancerAdvanced hepatocellular carcinomaTargeted therapysorafenibNAMalignant cells-0.2722181.85e-24

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Expression of ATF1 in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to ATF1

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.

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MicroRNAs (miRNA) regulating ATF1

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
ATF1hsa-miR-316399.5388NM_005171
ATF1hsa-miR-340-5p99.2456NM_005171
ATF1hsa-miR-477599.148NM_005171
ATF1hsa-miR-568998.2965NM_005171
ATF1hsa-miR-848598.2369NM_005171
ATF1hsa-miR-548g-3p98.0712NM_005171
ATF1hsa-miR-548c-3p96.9564NM_005171
ATF1hsa-miR-548av-3p96.6358NM_005171
ATF1hsa-miR-548j-3p96.6221NM_005171
ATF1hsa-miR-548aj-3p96.2079NM_005171
ATF1hsa-miR-548x-3p96.2079NM_005171
ATF1hsa-miR-548ae-3p95.9232NM_005171
ATF1hsa-miR-548aq-3p95.9232NM_005171
ATF1hsa-miR-548am-3p95.9232NM_005171
ATF1hsa-miR-548ah-3p95.9232NM_005171
ATF1hsa-miR-616-5p94.5543NM_005171
ATF1hsa-miR-371b-5p94.5543NM_005171
ATF1hsa-miR-373-5p94.5543NM_005171
ATF1hsa-miR-3613-3p94.446NM_005171
ATF1hsa-miR-6759-3p94.3162NM_005171
ATF1hsa-miR-190a-3p92.857NM_005171
ATF1hsa-miR-9-5p90.9827NM_005171
ATF1hsa-miR-217-5p90.5907NM_005171
ATF1hsa-miR-6807-3p90.5907NM_005171
ATF1hsa-miR-92290.4147NM_005171
ATF1hsa-miR-500b-5p90.3849NM_005171
ATF1hsa-miR-362-5p90.3849NM_005171
ATF1hsa-miR-32-3p90.248NM_005171
ATF1hsa-miR-487b-5p90.2091NM_005171
ATF1hsa-miR-487a-5p90.2091NM_005171
ATF1hsa-miR-4668-3p89.2938NM_005171
ATF1hsa-miR-6817-5p89.1283NM_005171
ATF1hsa-miR-4769-3p89.1283NM_005171
ATF1hsa-miR-6773-3p87.7835NM_005171
ATF1hsa-miR-568886.9786NM_005171
ATF1hsa-miR-5011-5p86.974NM_005171
ATF1hsa-miR-6516-5p86.4365NM_005171
ATF1hsa-miR-192-5p85.7092NM_005171
ATF1hsa-miR-215-5p85.7092NM_005171
ATF1hsa-miR-410-3p85.3969NM_005171
ATF1hsa-miR-30a-5p82.3722NM_005171
ATF1hsa-miR-30d-5p82.3722NM_005171
ATF1hsa-miR-30c-5p82.3722NM_005171
ATF1hsa-miR-30e-5p82.3722NM_005171
ATF1hsa-miR-30b-5p82.3722NM_005171
ATF1hsa-miR-1277-5p82.3202NM_005171
ATF1hsa-miR-6505-5p81.7935NM_005171
ATF1hsa-miR-495-3p81.4526NM_005171
ATF1hsa-miR-323a-3p81.0154NM_005171
ATF1hsa-miR-129080.9376NM_005171
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Motifs and transcription factors (TFs) regulating ATF1

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
ATF1metacluster_195.2EGR2; KLF10; KLF10; KLF11; KLF11; KLF11; KLF13; KLF13; KLF13; KLF13; KLF13; KLF14; KLF14; KLF14; KLF14; KLF14; KLF15; KLF15; KLF16; KLF3; KLF8; KLF9; KLF9; KLF9; SP1; SP1; SP1; SP3; SP3; SP4; SP8; SP8; SP8; SP9; SP9 (directAnnotation). EGR1; KLF1; KLF12; KLF13; KLF14; KLF14; KLF14; KLF14; KLF14; KLF14; KLF16; KLF17; KLF17; KLF17; KLF17; KLF18; KLF18; KLF18; KLF18; KLF18; KLF18; KLF2; KLF2; KLF2; KLF3; KLF4; KLF5; KLF5; KLF5; KLF6; KLF7; KLF7; KLF8; KLF9; SP1; SP3; SP4; SP4; SP5; SP5; SP5; SP6; SP7; SP8; SP9 (inferredBy_Orthology).
ATF1kznf__ZBTB14_Schmitges2016_RCADEZBTB14 (directAnnotation).
ATF1metacluster_3.5KLF14; KLF15; KLF15; KLF16 (directAnnotation).
ATF1taipale_cyt_meth__ZNF460_NRMCGCCCCCCGN_eDBD_methZNF460 (directAnnotation).
ATF1taipale_cyt_meth__E2F2_NCGCGCGCGCM_eDBD_methE2F2 (directAnnotation).
ATF1transfac_pro__M07387ZBTB7A (directAnnotation).
ATF1transfac_pro__M07436WT1 (directAnnotation).
ATF1transfac_pro__M07461KLF1; KLF10; KLF11; KLF12; KLF13; KLF15; KLF16; KLF17; KLF2; KLF3; KLF4; KLF5; KLF6; KLF7; KLF8; KLF9 (directAnnotation).
ATF1transfac_pro__M00716ZBTB14 (directAnnotation).
ATF1swissregulon__hs__CHD1CHD1 (directAnnotation).
ATF1hdpi__HIP2UBE2K (directAnnotation).
ATF1metacluster_170.2KLF1; KLF10; KLF10; KLF11; KLF11; KLF11; KLF12; KLF12; KLF14; KLF15; KLF17; KLF2; KLF5; KLF7; KLF7; KLF8; MAZ; MAZ; PATZ1; SP1; SP1; SP1; SP2; SP2; SP2; SP2; SP2; SP2; SP2; SP2; SP4; SP4; SP5; SP6; SP7; SP8; SP9; ZNF281 (directAnnotation). E2F1; E2F4; KLF10; KLF13; KLF14; KLF17; KLF2; KLF7; SP1; SP1; SP3; SP4; SP5; SP6; SP7 (inferredBy_Orthology).
ATF1transfac_pro__M04893TAF1 (directAnnotation).
ATF1transfac_pro__M03876ZBTB33 (directAnnotation).
ATF1metacluster_15.2E2F1; E2F1; E2F1; E2F1; E2F1; E2F3; E2F4; E2F4; E2F4; E2F6; E2F6; E2F6; E2F6; E2F6; E2F6; E2F6; E2F7; TFDP1; TFDP2; ZNF566; ZNF566; ZNF574 (directAnnotation). E2F3; E2F3; E2F4 (inferredBy_Orthology).
ATF1metacluster_133.1ZNF304; ZNF304; ZSCAN22 (directAnnotation).
ATF1kznf__ZNF441_Imbeault2017_RP_RCADEZNF441 (directAnnotation).
ATF1transfac_pro__M01219SP1 (directAnnotation). SP3 (inferredBy_Orthology).
ATF1metacluster_3.7SP1; SP1; SP1; SP1; SP1; SP1; SP1; SP1; SP2; SP2; SP2; SP2; SP3; SP3; SP3; SP4; SP4; SP4; SP4; SP4; SP4; SP5 (directAnnotation).
ATF1metacluster_191.2ELK4; NR2C2; NR2C2; NR2C2; NR2C2 (directAnnotation). GABPA (inferredBy_Orthology).
ATF1metacluster_197.2E2F4; E2F7; E2F7; E2F7; E2F8; E2F8 (directAnnotation).
ATF1transfac_pro__M04950EGR1 (directAnnotation).
ATF1transfac_pro__M01182HINFP (directAnnotation).
ATF1swissregulon__hs__ETV6ETV6 (directAnnotation).
ATF1dbtfbs__GMEB1_K562_ENCSR928KOR_merged_N1GMEB1 (directAnnotation).
ATF1taipale_tf_pairs__ETV2_HES7_NNCACGTGNNNNNCGGAWRY_CAP_reprETV2; HES7 (directAnnotation).
ATF1kznf__ZNF730_Imbeault2017_RP_RCADEZNF730 (directAnnotation).
ATF1cisbp__M00968MTF2 (directAnnotation).
ATF1cisbp__M00341PAX6 (directAnnotation).
ATF1metacluster_141.5NR3C1; THAP1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY2; YY2; ZNF597 (directAnnotation). YY1; YY1; YY1; YY2; ZFP42 (inferredBy_Orthology).
ATF1metacluster_151.1KAT7; PML; SMAD5; TAF1; ZFP37; ZGPAT; ZNF519; ZNF519; ZNF571; ZNF770; ZNF770; ZNF770; ZSCAN22; ZSCAN22 (directAnnotation).
ATF1transfac_pro__M02844BCL6B (inferredBy_Orthology).
ATF1transfac_pro__M01199TRIM28 (directAnnotation).
ATF1metacluster_151.2ZNF23 (directAnnotation).
ATF1transfac_pro__M03806ZBTB7C (directAnnotation).
ATF1transfac_pro__M00915TFAP2A; TFAP2B; TFAP2C (directAnnotation).
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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.
TFmotifExpressionCell typeDatasetTimepoint
ATF1metacluster_111.3upMalignant cells

GSE153697

NA
ATF1jaspar__MA0604.1upMalignant cells

GSE153697

NA
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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.



1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."