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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene (This gene does not contain this module)

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor (This gene does not contain this module)

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Acts as a drug target

Gene: ABAT

Summary for ABAT

Gene informationGene symbol

ABAT

Ensembl ID

ENSG00000183044

Entrez ID

18

Gene name4-aminobutyrate aminotransferase
SynonymsGABA-T|GABAT
Gene typeprotein_coding
UniProtAcc

NA


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Dataset with differentially expressed gene: ABAT

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE139386

H3122 cell lineCell lineLung cancerEML4-ALK fusion-positive non-small cell lung cancer (NSCLC)Targeted therapyceritinibNAMalignant cells-0.3063130.00e+00

GSE104987

MCF7 cell lineCell lineBreast cancerER+ breast cancerTargeted therapyKDM5-C70NAMalignant cells-0.4096082.67e-24

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Expression of ABAT in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to ABAT

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.

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MicroRNAs (miRNA) regulating ABAT

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
ABAThsa-miR-7850-5p92.0054NM_000663
ABAThsa-miR-183-5p91.7387NM_001127448
ABAThsa-miR-545-5p90.8404NM_001127448
ABAThsa-miR-3180-5p88.8389NM_000663
ABAThsa-miR-6837-5p86.6058NM_001127448
ABAThsa-miR-374a-5p86.3581NM_001127448
ABAThsa-miR-6768-5p85.8955NM_000663
ABAThsa-miR-374b-5p85.0026NM_001127448
ABAThsa-miR-368683.4118NM_000663
ABAThsa-miR-6507-5p83.2435NM_000663
ABAThsa-miR-4520-3p82.1945NM_001127448
ABAThsa-miR-6831-3p81.9601NM_001127448
ABAThsa-miR-4685-5p81.3338NM_001127448
ABAThsa-miR-364681.1608NM_001127448
Page: 1

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Motifs and transcription factors (TFs) regulating ABAT

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
ABATmetacluster_174.3MBD2; NFYA; NFYB; NFYC; PBX3 (directAnnotation).
ABATmetacluster_174.2CEBPZ; CEBPZ; DRAP1; FOS; FOXI1; FOXI1; HMGXB3; IRF3; NFYA; NFYA; NFYA; NFYA; NFYA; NFYA; NFYA; NFYA; NFYA; NFYB; NFYB; NFYB; NFYB; NFYB; NFYC; NFYC; NFYC; NFYC; NFYC; NFYC; NFYC; PBX3; PBX3; SP2 (directAnnotation). NFYA; NFYA; NFYC; PBX1; PBX3 (inferredBy_Orthology).
ABATtaipale_tf_pairs__E2F1_ELK1_SGCGCNNNNNCGGAAGN_CAP_reprE2F1; ELK1 (directAnnotation).
ABATtaipale_tf_pairs__ETV2_HES7_RSCGGAANNNNNNCACGTGNN_CAP_reprETV2; HES7 (directAnnotation).
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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.

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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.
Target nameDrug nameDrug IDDrug type
ABAT"(4e)-4-Aminohex-4-Enoic Acid"

DB01699

small molecule
ABAT"4-Amino Hexanoic Acid"

DB04235

small molecule
ABAT"Alanine"

DB00160

small molecule
ABAT"Glutamic acid"

DB00142

small molecule
ABAT"Phenelzine"

DB00780

small molecule
ABAT"Pyridoxal phosphate"

DB00114

small molecule
ABAT"Pyruvic acid"

DB00119

small molecule
ABAT"Vigabatrin"

DB01080

small molecule
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1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."