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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor (This gene does not contain this module)

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Acts as a drug target

Gene: CTNNB1

Summary for CTNNB1

Gene informationGene symbol

CTNNB1

Ensembl ID

ENSG00000168036

Entrez ID

1499

Gene namecatenin beta 1
Synonymsarmadillo|beta-catenin|CTNNB
Gene typeprotein_coding
UniProtAcc

P35222


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Dataset with differentially expressed gene: CTNNB1

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE153697

patientsBone marrow aspirateAcute lymphoblastic leukemiaRelapsed B-cell acute lymphoblastic leukemia (B-ALL)Immunotherapyanti-CD19 CAR-TNAMalignant cells-0.3131283.58e-06

GSE164551

patientsBone marrow aspirateMultiple myelomaRefractory multiple myeloma (MM)ImmunotherapyCAR-TNAMono/Macro-0.5071462.85e-30

GSE199333

patientsBone marrow aspirateAcute myeloid leukemiaPrimary FLT3-ITD-mutated acute myeloid leukemia (AML)Targeted therapygilteritinibpostMalignant cells-1.725340.00e+00

GSE199333

patientsBone marrow aspirateAcute myeloid leukemiaPrimary FLT3-ITD-mutated acute myeloid leukemia (AML)Targeted therapygilteritinibpostNK cells-0.4790310.00e+00

GSE199333

patientsBone marrow aspirateAcute myeloid leukemiaPrimary FLT3-ITD-mutated acute myeloid leukemia (AML)Targeted therapygilteritinibpostCD8+ T cells-0.3234486.93e-35

GSE199333

patientsBone marrow aspirateAcute myeloid leukemiaPrimary FLT3-ITD-mutated acute myeloid leukemia (AML)Targeted therapygilteritinibpreMalignant cells-0.4848390.00e+00

GSE108397

451Lu cell lineCell lineMelanomaMelanomaTargeted therapyPLX-4720NAMalignant cells-0.4271045.50e-37

GSE115251

Kelly cell lineCell lineNeuroblastomaNeuroblastomaTargeted therapyTAE684NAMalignant cells-0.5024290.00e+00

GSE164897_VemCob

A375 cell lineCell lineMelanomaBRAFV600E-mutant melanomaTargeted therapyvemurafenib + combimetinibNAMalignant cells0.5227090.00e+00

GSE164897_VemTra

A375 cell lineCell lineMelanomaB+E2:E57RAFV600E-mutant melanomaTargeted therapyvemurafenib + trametinibNAMalignant cells0.8440480.00e+00

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Expression of CTNNB1 in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to CTNNB1

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.
Gene symbolMechanism

CTNNB1

Regulation by the Disease Microenvironment

CTNNB1

Unusual Activation of Pro-survival Pathway
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MicroRNAs (miRNA) regulating CTNNB1

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
CTNNB1hsa-miR-3613-3p99.4048NM_001904
CTNNB1hsa-miR-3162-3p98.2776NM_001904
CTNNB1hsa-miR-548g-5p97.8671NM_001904
CTNNB1hsa-miR-548x-5p97.8671NM_001904
CTNNB1hsa-miR-548aj-5p97.8671NM_001904
CTNNB1hsa-miR-548f-5p97.8671NM_001904
CTNNB1hsa-miR-183-3p97.7022NM_001904
CTNNB1hsa-miR-3688-5p97.3434NM_001904
CTNNB1hsa-miR-449697.0626NM_001904
CTNNB1hsa-miR-4999-5p97.0069NM_001904
CTNNB1hsa-miR-885-5p96.9401NM_001904
CTNNB1hsa-miR-561-3p95.5993NM_001904
CTNNB1hsa-miR-1468-3p94.4608NM_001904
CTNNB1hsa-miR-548aw94.4351NM_001904
CTNNB1hsa-miR-548n92.6437NM_001904
CTNNB1hsa-miR-4708-3p92.2256NM_001904
CTNNB1hsa-miR-4776-5p92.1847NM_001904
CTNNB1hsa-miR-4733-5p92.0995NM_001098210
CTNNB1hsa-miR-6792-5p92.021NM_001904
CTNNB1hsa-miR-3120-3p91.9731NM_001904
CTNNB1hsa-let-7f-1-3p91.5214NM_001098210
CTNNB1hsa-let-7a-3p91.5214NM_001098210
CTNNB1hsa-miR-98-3p91.5214NM_001098210
CTNNB1hsa-let-7b-3p91.5214NM_001098210
CTNNB1hsa-miR-6512-5p90.856NM_001904
CTNNB1hsa-miR-6513-5p90.3899NM_001098210
CTNNB1hsa-miR-450390.346NM_001098210
CTNNB1hsa-miR-892c-5p90.2004NM_001098210
CTNNB1hsa-miR-441889.6341NM_001904
CTNNB1hsa-miR-6807-3p89.6341NM_001904
CTNNB1hsa-miR-509-5p89.5753NM_001904
CTNNB1hsa-miR-217-5p89.5753NM_001904
CTNNB1hsa-miR-509-3-5p89.5753NM_001904
CTNNB1hsa-miR-891a-3p88.5479NM_001904
CTNNB1hsa-miR-589-3p88.2951NM_001904
CTNNB1hsa-miR-548t-5p88.057NM_001904
CTNNB1hsa-miR-548az-5p88.057NM_001904
CTNNB1hsa-miR-6715b-5p87.497NM_001904
CTNNB1hsa-miR-426987.497NM_001904
CTNNB1hsa-miR-3619-3p87.3016NM_001904
CTNNB1hsa-miR-642b-5p86.6703NM_001904
CTNNB1hsa-miR-311986.343NM_001904
CTNNB1hsa-miR-6816-3p86.0022NM_001098209
CTNNB1hsa-miR-10399-5p85.0745NM_001904
CTNNB1hsa-miR-464384.852NM_001904
CTNNB1hsa-miR-3529-3p84.8004NM_001098210
CTNNB1hsa-miR-545-3p84.6479NM_001904
CTNNB1hsa-miR-495-5p84.6325NM_001904
CTNNB1hsa-miR-214-3p82.855NM_001904
CTNNB1hsa-miR-76182.855NM_001904
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Motifs and transcription factors (TFs) regulating CTNNB1

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
CTNNB1transfac_pro__M07397ZNF148 (directAnnotation).
CTNNB1taipale_tf_pairs__ETV5_HOXA2_RSCGGWAATKR_CAPETV5; HOXA2 (directAnnotation).
CTNNB1swissregulon__hs__ETV6ETV6 (directAnnotation).
CTNNB1metacluster_191.2ELK4; NR2C2; NR2C2; NR2C2; NR2C2 (directAnnotation). GABPA (inferredBy_Orthology).
CTNNB1metacluster_191.3EHF; ELF1; ELF1; ELF1; ELF4; ELK1; ELK3; ELK3; ELK4; ELK4; ERF; ETS1; ETS2; ETV3; ETV4; ETV5; FEV; FEV; FLI1; FLI1; GABPA; GABPA; GABPA; GABPA; GABPA; GABPA; SPDEF; ZNF200 (directAnnotation). ELK1; ELK1; ELK3; ELK3; ELK4; ELK4; ETV1; ETV1; ETV4; ETV4; ETV4; ETV5; GABPA; GABPA (inferredBy_Orthology).
CTNNB1taipale_tf_pairs__ELF2_NATGCGGAAGTR_HTELF2 (directAnnotation).
CTNNB1metacluster_166.4BCLAF1; EHF; ELF1; ELF1; ELF1; ELF1; ELF1; ELF1; ELF2; ELF2; ELF4; ELK1; ELK1; ELK1; ELK1; ELK1; ELK1; ELK1; ELK1; ELK1; ELK3; ELK3; ELK3; ELK3; ELK4; ERG; ERG; ERG; ERG; ETS1; ETS1; ETS1; ETS1; ETS1; ETV1; ETV1; ETV1; ETV1; ETV2; ETV3; ETV4; ETV4; ETV4; ETV4; ETV4; ETV5; ETV7; FEV; FEV; FLI1; FLI1; FLI1; FLI1; GABPA; GABPA; GABPA; GABPA; GABPA; GABPA; GABPB1; GATAD1; PHF20; ZBTB25; ZBTB40 (directAnnotation). EHF; ELF1; ELF1; ELF3; ELF5; ELK3; ELK4; ERG; ETS1; ETV1; ETV2; ETV4; FLI1; GABPA; GABPA (inferredBy_Orthology).
CTNNB1cisbp__M02645ETS1 (directAnnotation).
CTNNB1taipale_tf_pairs__ETV5_EVX1_RSCGGWAATKR_CAPETV5; EVX1 (directAnnotation).
CTNNB1taipale_tf_pairs__ETV5_FOXI1_RSCGGATGTTGN_CAPETV5; FOXI1 (directAnnotation).
CTNNB1cisbp__M08198ELF1 (directAnnotation).
CTNNB1metacluster_166.2ELK4; ETS1; ETS1; ETV1; ETV3; ETV4; ETV5; ETV7 (directAnnotation). GABPA (inferredBy_Orthology).
CTNNB1transfac_pro__M04748GABPA (directAnnotation).
CTNNB1taipale_tf_pairs__ERF_FOXI1_RSCGGATGTTKWN_CAP_reprERF; FOXI1 (directAnnotation).
CTNNB1transfac_pro__M06305ZNF583 (inferredBy_Orthology).
CTNNB1jaspar__MA1708.1ETV7 (directAnnotation).
CTNNB1taipale_tf_pairs__ETV2_RFX5_NNNTTCCGSNNNNGCAACNN_CAP_reprETV2; RFX5 (directAnnotation).
CTNNB1taipale_tf_pairs__ELK1_TBX21_TNRCACCGGAAGNN_CAP_reprELK1; TBX21 (directAnnotation).
CTNNB1metacluster_15.4SMAD6 (directAnnotation). SMAD6 (inferredBy_Orthology).
CTNNB1taipale_tf_pairs__ERF_FOXI1_TGTTKMCGGAWRN_CAP_reprERF; FOXI1 (directAnnotation).
CTNNB1taipale_tf_pairs__GCM1_ETV7_NTNNNGGCGGAAGNNNTTCCNNN_CAP_reprETV7; GCM1 (directAnnotation).
CTNNB1taipale_tf_pairs__ELK1_FOXI1_RSCGGATGTKKN_CAPELK1; FOXI1 (directAnnotation).
CTNNB1taipale_tf_pairs__MYBL1_EOMES_NNSYGNCNAACNNNNNNCACRCNN_CAP_reprEOMES; MYBL1 (directAnnotation).
CTNNB1taipale_tf_pairs__TFAP2C_MAX_TNSCCNNNGGSNNNCACGTGN_CAP_reprMAX; TFAP2C (directAnnotation).
CTNNB1transfac_pro__M06135ZNF28 (directAnnotation).
CTNNB1taipale_tf_pairs__FOXO1_ELK1_TGTTGCCGGANNN_CAPELK1; FOXO1 (directAnnotation).
CTNNB1taipale_cyt_meth__ZBTB2_NTTTMCGGTWAN_eDBDZBTB2 (directAnnotation).
CTNNB1metacluster_19.1GMEB2; GMEB2; GMEB2 (directAnnotation).
CTNNB1taipale_tf_pairs__GCM1_ELK1_RTGCGGGCGGAAGTN_CAP_1ELK1; GCM1 (directAnnotation).
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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.

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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.
Target nameDrug nameDrug IDDrug type
CTNNB1"Urea"

DB03904

small molecule
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1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."