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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene (This gene does not contain this module)

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor (This gene does not contain this module)

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Acts as a drug target< (This gene does not contain this module)

Gene: SH3KBP1

Summary for SH3KBP1

Gene informationGene symbol

SH3KBP1

Ensembl ID

ENSG00000147010

Entrez ID

30011

Gene nameSH3 domain containing kinase binding protein 1
SynonymsCIN85
Gene typeprotein_coding
UniProtAcc

Q96B97


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Dataset with differentially expressed gene: SH3KBP1

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE140440

DU145 and PC cell linesCell lineProstate cancerProstate cancerChemotherapydocetaxelNAMalignant cells1.362541.70e-15

GSE186960

Panc1 cell lineCell linePancreatic cancerPancreatic ductal adenocarcinoma (PDAC)ChemotherapygemcitabineNAMalignant cells-0.760480.00e+00

GSE163836

FCIBC02 cell lineCell lineBreast cancerInflammatory breast cancerChemotherapypaclitaxelNAMalignant cells-0.302410.00e+00

GSE169246_PacBlood

patientsPeripheral blood mononuclear cellsBreast cancerAdvanced triple-negative breast cancer (TNBC)ChemotherapypaclitaxelpreNK cells0.2989970.00e+00

PMID34715028

patientsTumor tissueKidney cancerClear cell renal cell carcinoma (ccRCC)ImmunotherapynivolumabpostCD4+ T cells0.259918.62e-12

GSE207422_Sin

patientsTumor tissueLung cancerEGFR/ALK mutation negative non-small cell lung cancer (NSCLC)Immunotherapysintilimab + carboplatin + (docetaxel or pemetrexed or emcitabine)postPlasma cells-0.2865421.85e-02

GSE207422_Tor

patientsTumor tissueLung cancerEGFR/ALK mutation negative non-small cell lung cancer (NSCLC)Immunotherapytoripalimab + carboplatin + (docetaxel or pemetrexed or emcitabine)postNeutrophils-0.2954816.65e-06

GSE189460

patientsBone marrow aspirateMultiple myelomaMultiple myeloma (MM)Targeted therapybortezomib + melphalan + prednisolonepreMalignant cells0.2996380.00e+00

GSE139386

H3122 cell lineCell lineLung cancerEML4-ALK fusion-positive non-small cell lung cancer (NSCLC)Targeted therapyceritinibNAMalignant cells0.9515630.00e+00

GSE199333

patientsBone marrow aspirateAcute myeloid leukemiaPrimary FLT3-ITD-mutated acute myeloid leukemia (AML)Targeted therapygilteritinibpostCD4+ T cells0.2565120.00e+00

GSE131984_JQ1

SUM159 cell lineCell lineBreast cancerTriple-negative breast cancer (TNBC)Targeted therapyJQ1NAMalignant cells-0.6150460.00e+00

GSE131984_JQ1Pac

SUM159 cell lineCell lineBreast cancerTriple-negative breast cancer (TNBC)Targeted therapyJQ1 + paclitaxelNAMalignant cells-0.8843410.00e+00

GSE131984_JQ1Pal

SUM159 cell lineCell lineBreast cancerTriple-negative breast cancer (TNBC)Targeted therapyJQ1 + palbociclibNAMalignant cells-0.4920886.09e-25

GSE131984_Pal

SUM159 cell lineCell lineBreast cancerTriple-negative breast cancer (TNBC)Targeted therapypalbociclibNAMalignant cells-0.5553373.25e-24

GSE108397

451Lu cell lineCell lineMelanomaMelanomaTargeted therapyPLX-4720NAMalignant cells-0.6214390.00e+00

GSE164897_VemTra

A375 cell lineCell lineMelanomaB+E2:E57RAFV600E-mutant melanomaTargeted therapyvemurafenib + trametinibNAMalignant cells-0.5463730.00e+00

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Expression of SH3KBP1 in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to SH3KBP1

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.

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MicroRNAs (miRNA) regulating SH3KBP1

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
SH3KBP1hsa-miR-4757-5p98.6449NM_001024666
SH3KBP1hsa-miR-6744-3p98.6449NM_001024666
SH3KBP1hsa-miR-6809-3p98.4918NM_001184960
SH3KBP1hsa-miR-4753-3p98.2049NM_001184960
SH3KBP1hsa-miR-335-3p97.9557NM_001024666
SH3KBP1hsa-miR-44897.0072NM_001024666
SH3KBP1hsa-miR-96-5p96.9482NM_001024666
SH3KBP1hsa-miR-548p96.365NM_001024666
SH3KBP1hsa-miR-1213396.2072NM_001024666
SH3KBP1hsa-miR-1271-5p96.2072NM_001024666
SH3KBP1hsa-miR-539-5p95.5771NM_001024666
SH3KBP1hsa-miR-7112-3p94.6872NM_001184960
SH3KBP1hsa-miR-10527-5p94.6306NM_001024666
SH3KBP1hsa-miR-450494.5216NM_001024666
SH3KBP1hsa-miR-520d-5p94.0513NM_001024666
SH3KBP1hsa-miR-524-5p94.0513NM_001024666
SH3KBP1hsa-miR-477593.7701NM_001184960
SH3KBP1hsa-miR-340-5p93.494NM_001184960
SH3KBP1hsa-miR-806693.2759NM_001184960
SH3KBP1hsa-miR-808793.0978NM_001184960
SH3KBP1hsa-miR-1252-3p92.9144NM_001184960
SH3KBP1hsa-miR-6885-3p92.6859NM_001184960
SH3KBP1hsa-miR-448392.0912NM_001184960
SH3KBP1hsa-miR-182-5p91.9409NM_001024666
SH3KBP1hsa-miR-1207-5p91.8827NM_001184960
SH3KBP1hsa-miR-624-5p91.7819NM_001024666
SH3KBP1hsa-miR-548c-3p91.1239NM_001024666
SH3KBP1hsa-miR-585-5p91.1015NM_001024666
SH3KBP1hsa-miR-4763-3p90.8921NM_001184960
SH3KBP1hsa-miR-427990.7952NM_001184960
SH3KBP1hsa-miR-218-5p90.7137NM_001024666
SH3KBP1hsa-miR-570090.519NM_001024666
SH3KBP1hsa-miR-548aj-5p90.4551NM_001024666
SH3KBP1hsa-miR-548g-5p90.4551NM_001024666
SH3KBP1hsa-miR-548x-5p90.4551NM_001024666
SH3KBP1hsa-miR-548f-5p90.4551NM_001024666
SH3KBP1hsa-miR-486-3p89.3699NM_001184960
SH3KBP1hsa-miR-6842-3p87.8153NM_001024666
SH3KBP1hsa-miR-129387.4335NM_001184960
SH3KBP1hsa-miR-432-3p87.0845NM_001184960
SH3KBP1hsa-miR-548av-3p87.0793NM_001184960
SH3KBP1hsa-miR-428286.8231NM_001184960
SH3KBP1hsa-miR-211-3p86.5796NM_001184960
SH3KBP1hsa-miR-450586.5136NM_001024666
SH3KBP1hsa-miR-578786.5136NM_001024666
SH3KBP1hsa-miR-447086.3955NM_001024666
SH3KBP1hsa-miR-542-3p86.173NM_001024666
SH3KBP1hsa-miR-513a-3p86.0864NM_001184960
SH3KBP1hsa-miR-3606-3p86.0864NM_001184960
SH3KBP1hsa-miR-513c-3p86.0864NM_001184960
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Motifs and transcription factors (TFs) regulating SH3KBP1

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
SH3KBP1kznf__ZNF571_Imbeault2017_OM_RCADEZNF571 (directAnnotation).
SH3KBP1hocomoco__PROX1_HUMAN.H11MO.0.DPROX1 (directAnnotation).
SH3KBP1transfac_pro__M01303SP1 (directAnnotation).
SH3KBP1taipale_tf_pairs__MYBL1_ELF1_NMCCGGAACCGTTR_CAP_reprELF1; MYBL1 (directAnnotation).
SH3KBP1metacluster_144.10ZNF100 (directAnnotation).
SH3KBP1transfac_pro__M01299MECP2 (directAnnotation).
SH3KBP1metacluster_21.5HOXB2; HSF1; HSF1; HSF1; HSF1; HSF1; HSF1; HSF1; HSF1; HSF2; HSF2; HSF2; HSF2; HSF2; HSF2; HSF4; HSF4; HSF4 (directAnnotation). HSF1; HSF1; HSF1; HSF1; HSF1; HSF1; HSF1; HSF2; HSF2; HSF2; HSF2; HSF4; HSF4; HSF4; HSF4; HSF5; HSF5; HSF5; HSF5; HSFX1; HSFX1; HSFX1; HSFX1; HSFX2; HSFX2; HSFX2; HSFX2; HSFX3; HSFX3; HSFX3; HSFX3; HSFX4; HSFX4; HSFX4; HSFX4; HSFY1; HSFY1; HSFY1; HSFY1; HSFY2; HSFY2; HSFY2; HSFY2 (inferredBy_Orthology).
SH3KBP1kznf__ZNF716_Imbeault2017_RP_RCADEZNF716 (directAnnotation).
SH3KBP1metacluster_131.3ZNF436 (inferredBy_Orthology).
SH3KBP1metacluster_76.1ZNF345; ZNF345 (directAnnotation). MYB; MYBL1 (inferredBy_Orthology).
SH3KBP1transfac_pro__M06756ZNF646 (directAnnotation).
SH3KBP1transfac_pro__M05465SNAI3 (inferredBy_Orthology).
SH3KBP1transfac_pro__M06989ZNF236 (directAnnotation).
SH3KBP1transfac_pro__M04944GABPA (directAnnotation).
SH3KBP1transfac_pro__M06487ZNF695 (directAnnotation).
SH3KBP1transfac_pro__M05609SALL3 (directAnnotation).
SH3KBP1metacluster_56.4HSF1; HSF2; HSF2; HSF4 (directAnnotation).
SH3KBP1tfdimers__MD00303ETS2; OTX1; OTX2 (directAnnotation).
SH3KBP1swissregulon__hs__ZBTB7AZBTB7A (directAnnotation).
SH3KBP1transfac_pro__M05421MYNN (inferredBy_Orthology).
SH3KBP1transfac_pro__M05915ZBTB20 (directAnnotation).
SH3KBP1transfac_pro__M04937TCF12 (directAnnotation).
SH3KBP1transfac_pro__M05524ZNF362 (directAnnotation).
SH3KBP1tfdimers__MD00010TP53; TP63; TP73 (directAnnotation).
SH3KBP1metacluster_182.5HINFP (directAnnotation).
SH3KBP1taipale_tf_pairs__JUN_ATGACGTCAT_HTJUN (directAnnotation).
SH3KBP1metacluster_7.6ZBTB11 (directAnnotation).
SH3KBP1transfac_pro__M06172ZNF90 (directAnnotation).
SH3KBP1jaspar__MA1489.1FOXN3 (directAnnotation).
SH3KBP1metacluster_26.3ZNF232 (directAnnotation).
SH3KBP1transfac_pro__M12556ETV4 (directAnnotation).
SH3KBP1metacluster_80.6ZIC4 (directAnnotation).
SH3KBP1metacluster_80.4ZIC3 (directAnnotation).
SH3KBP1kznf__ZNF445_Imbeault2017_OM_MEMEZNF445 (directAnnotation).
SH3KBP1transfac_pro__M02933ZBTB14 (inferredBy_Orthology).
SH3KBP1dbtfbs__ZNF407_representative_N1ZNF407 (directAnnotation).
SH3KBP1transfac_pro__M00655ETV4 (directAnnotation).
SH3KBP1transfac_pro__M03844ELK4 (directAnnotation).
SH3KBP1taipale_tf_pairs__ERF_HOXA3_RSCGGAWNNNNNNNYMATTA_CAP_reprERF; HOXA3 (directAnnotation).
SH3KBP1taipale_tf_pairs__TEAD4_CEBPD_NTTRCGYAANNNNNNRGWATGY_CAPCEBPD; TEAD4 (directAnnotation).
SH3KBP1jaspar__MA1509.1IRF6 (directAnnotation).
SH3KBP1metacluster_187.2PRDM1; PRDM1; ZNF184 (directAnnotation).
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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.

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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.



1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."